| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606536
Identifier: 86606536
GI number: 86606536
Start: 1896634
End: 1897416
Strand: Reverse
Name: 86606536
Synonym: CYA_1889
Alternate gene names: NA
Gene position: 1897416-1896634 (Counterclockwise)
Preceding gene: 86606537
Following gene: 86606534
Centisome position: 64.7
GC content: 62.45
Gene sequence:
>783_bases ATGAAGGTCATTAGCCTACTCACTGATTTTGGTCTTCAGGATCCCTACGTGGGCATTCTGAAGGGGGTGATTTGGGGGAT CGCGCCCCAGGTTCAGTTTATCGACCTTAGCCACGAAATCCCGCCTCAGGACGTGGCAGCGGCCCGTTTTGCCTTGATGA CGGCCTATCCCCATTTACCTTCTGAAACCATTCACCTAGCGGTGGTAGATCCAGGGGTGGGGAGCAGCCGAAGGGCGGTG GCCATCCAAACCCAAGGAGGCTATTTGGTCGGCCCTGACAATGGCCTCTTCAGCGGCGTTCTGGAGCAATCCCCACCTCT AGCTGCTGTGGAACTCAACCGACCCCGCTATTGGCGCACCCCCTCCCCCAGCCGTACCTTTCACGGGCGGGATATTTTTG CCCCCGTGGCCGCCCACCTGGCCAACGGGATCCCCTTGGCAGAGTTGGGGGATCCCTTGGATGTGGCCGAGCTGGTTCGC TGGGACTGGCCGCCACCTCAGGCAGAACCCGACGGCGGCCGCGGCGTGATCCAGTCCATCGACCGCTTCGGCAACGGCAT CACCACTCTCCCTGGCAACTGGGTAGAGGGCCGCAACTGGAGGGCCTGGATCAAGGGGATCACCATCCGCTCCGCCGCCA CCTTTGCCGAGGGAAGCGAGGGCGAGCTGCTTGCCCTGGTGGGCAGCTCCGGCTGGGTGGAGATCGCGCAAAACCGGGGC AACGCCAGCCGCACCTTGGATTTCAAAGTAGGGGACGAGGTGCGCGTGCAGTGGGATAGCTAG
Upstream 100 bases:
>100_bases GCTATCGCTTCACCGCTGAGCAGTAATGCTCAGCAGTGTTCAGCGTAAATGTATCAGCTAAAAGTTCCCAGAGGGCTGGC AAGCGCTGCTTAGCTCGCCA
Downstream 100 bases:
>100_bases CCGAACTCCCTCCCCCCTGCCCCCTCTCGCTTGGGGAGAAGGGAGACTAGGCAGGCTGGCTTTCCACCGTTAAAGTTTCC GGCTCAGCTGCGGAAGTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MKVISLLTDFGLQDPYVGILKGVIWGIAPQVQFIDLSHEIPPQDVAAARFALMTAYPHLPSETIHLAVVDPGVGSSRRAV AIQTQGGYLVGPDNGLFSGVLEQSPPLAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELVR WDWPPPQAEPDGGRGVIQSIDRFGNGITTLPGNWVEGRNWRAWIKGITIRSAATFAEGSEGELLALVGSSGWVEIAQNRG NASRTLDFKVGDEVRVQWDS
Sequences:
>Translated_260_residues MKVISLLTDFGLQDPYVGILKGVIWGIAPQVQFIDLSHEIPPQDVAAARFALMTAYPHLPSETIHLAVVDPGVGSSRRAV AIQTQGGYLVGPDNGLFSGVLEQSPPLAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELVR WDWPPPQAEPDGGRGVIQSIDRFGNGITTLPGNWVEGRNWRAWIKGITIRSAATFAEGSEGELLALVGSSGWVEIAQNRG NASRTLDFKVGDEVRVQWDS >Mature_260_residues MKVISLLTDFGLQDPYVGILKGVIWGIAPQVQFIDLSHEIPPQDVAAARFALMTAYPHLPSETIHLAVVDPGVGSSRRAV AIQTQGGYLVGPDNGLFSGVLEQSPPLAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELVR WDWPPPQAEPDGGRGVIQSIDRFGNGITTLPGNWVEGRNWRAWIKGITIRSAATFAEGSEGELLALVGSSGWVEIAQNRG NASRTLDFKVGDEVRVQWDS
Specific function: Unknown
COG id: COG1912
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002747 - InterPro: IPR023227 - InterPro: IPR023228 [H]
Pfam domain/function: PF01887 DUF62 [H]
EC number: NA
Molecular weight: Translated: 28141; Mature: 28141
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVISLLTDFGLQDPYVGILKGVIWGIAPQVQFIDLSHEIPPQDVAAARFALMTAYPHLP CHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC SETIHLAVVDPGVGSSRRAVAIQTQGGYLVGPDNGLFSGVLEQSPPLAAVELNRPRYWRT CCEEEEEEECCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHCCCCEEEEECCCCEEECC PSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELVRWDWPPPQAEPDGGRGVIQSI CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHH DRFGNGITTLPGNWVEGRNWRAWIKGITIRSAATFAEGSEGELLALVGSSGWVEIAQNRG HHHCCCEEECCCCCCCCCCEEEEEEEEEEECHHHCCCCCCCCEEEEECCCCEEEEECCCC NASRTLDFKVGDEVRVQWDS CCCEEEEEEECCEEEEEECC >Mature Secondary Structure MKVISLLTDFGLQDPYVGILKGVIWGIAPQVQFIDLSHEIPPQDVAAARFALMTAYPHLP CHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC SETIHLAVVDPGVGSSRRAVAIQTQGGYLVGPDNGLFSGVLEQSPPLAAVELNRPRYWRT CCEEEEEEECCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHCCCCEEEEECCCCEEECC PSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELVRWDWPPPQAEPDGGRGVIQSI CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHH DRFGNGITTLPGNWVEGRNWRAWIKGITIRSAATFAEGSEGELLALVGSSGWVEIAQNRG HHHCCCEEECCCCCCCCCCEEEEEEEEEEECHHHCCCCCCCCEEEEECCCCEEEEECCCC NASRTLDFKVGDEVRVQWDS CCCEEEEEEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]