Click here to switch to the map view.

The map label for this gene is cpcS1

Identifier: 86606447

GI number: 86606447

Start: 1795065

End: 1795619

Strand: Reverse

Name: cpcS1

Synonym: CYA_1794

Alternate gene names: 86606447

Gene position: 1795619-1795065 (Counterclockwise)

Preceding gene: 86606448

Following gene: 86606446

Centisome position: 61.23

GC content: 59.64

Gene sequence:

>555_bases
ATGAATGCCCTGCAAAAATTTCACCACTTCTTCAACTGCTGCATTGGCGCCTGGCACACCGAGCGCACCTACCACTATTT
GGATCGAGGGGAGGTGGAGCGTTCGCGCACCGACTTCACCATTCGCACCCTCACCCCTGAGCTCAAGGAGAAGGTCCTGG
CCGACAACAACTACCCCAACCACGGTGTGGACGGGTTTTTGGGCTTCCACCTGGCGTTTGAGACGGTTTCCGAAAAAGGG
GAGGAGGCTGGGCAAGAGCTAAACATGCTCTTCGTGCCCCGGCGAGAAGGGCCCCGTGGGCTGGAGGGCGACTACTTGCG
GGATCGGGCCTATGAGGAAGACCGCCCCATAGTGGCCAGCTTCCGCTTCGATCCCGGATCCCTGCAACTGGTGATGACCA
CCACCTACACCCGCGTCGTTGCTGTGGATACCATCACCTTGCTTAACCCACGCCTGCGCCTGCGCCAGATCCTCACCTAC
CAACGACCCCCTCACGGTCAGCCCTTGGAGGAGCTGCTGCTGGTGGGGTTTGGGGTAGAACAAAAGCTTACCTAG

Upstream 100 bases:

>100_bases
GCTAACACCTGAGGGGGAGAAGGGGAGTGCCTGTTTGTCTGCGATTCGTTTTAGGATCGGGTTTAGCCGTCCACTTGGCC
CTGCTCTCGATCCCTCTGGC

Downstream 100 bases:

>100_bases
GGGGGTTTATCGGTGGATCCGGAGTTGATCCCTCCCGAAGACTTGCGCCTGCCCCAGCATCTGGCCCGGATTGAGGCCAG
CTTTGAGCGGGGACAATACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNALQKFHHFFNCCIGAWHTERTYHYLDRGEVERSRTDFTIRTLTPELKEKVLADNNYPNHGVDGFLGFHLAFETVSEKG
EEAGQELNMLFVPRREGPRGLEGDYLRDRAYEEDRPIVASFRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTY
QRPPHGQPLEELLLVGFGVEQKLT

Sequences:

>Translated_184_residues
MNALQKFHHFFNCCIGAWHTERTYHYLDRGEVERSRTDFTIRTLTPELKEKVLADNNYPNHGVDGFLGFHLAFETVSEKG
EEAGQELNMLFVPRREGPRGLEGDYLRDRAYEEDRPIVASFRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTY
QRPPHGQPLEELLLVGFGVEQKLT
>Mature_184_residues
MNALQKFHHFFNCCIGAWHTERTYHYLDRGEVERSRTDFTIRTLTPELKEKVLADNNYPNHGVDGFLGFHLAFETVSEKG
EEAGQELNMLFVPRREGPRGLEGDYLRDRAYEEDRPIVASFRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTY
QRPPHGQPLEELLLVGFGVEQKLT

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CPXS1_SYNJA (Q2JTP2)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_475210.1
- ProteinModelPortal:   Q2JTP2
- STRING:   Q2JTP2
- GeneID:   3897987
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1794
- TIGR:   CYA_1794
- HOGENOM:   HBG441971
- OMA:   ERTYHYL
- ProtClustDB:   CLSK923102
- BioCyc:   SSP321327:CYA_1794-MONOMER
- GO:   GO:0005488
- HAMAP:   MF_01459
- InterPro:   IPR012674
- InterPro:   IPR018536
- Gene3D:   G3DSA:2.40.128.20

Pfam domain/function: PF09367 CpeS

EC number: NA

Molecular weight: Translated: 21309; Mature: 21309

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALQKFHHFFNCCIGAWHTERTYHYLDRGEVERSRTDFTIRTLTPELKEKVLADNNYPN
CCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCC
HGVDGFLGFHLAFETVSEKGEEAGQELNMLFVPRREGPRGLEGDYLRDRAYEEDRPIVAS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEE
FRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTYQRPPHGQPLEELLLVGFGVE
EEECCCCEEEEEEECEEEEEEEHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCH
QKLT
HCCC
>Mature Secondary Structure
MNALQKFHHFFNCCIGAWHTERTYHYLDRGEVERSRTDFTIRTLTPELKEKVLADNNYPN
CCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCC
HGVDGFLGFHLAFETVSEKGEEAGQELNMLFVPRREGPRGLEGDYLRDRAYEEDRPIVAS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEE
FRFDPGSLQLVMTTTYTRVVAVDTITLLNPRLRLRQILTYQRPPHGQPLEELLLVGFGVE
EEECCCCEEEEEEECEEEEEEEHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCH
QKLT
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA