| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is comEC [H]
Identifier: 86605994
GI number: 86605994
Start: 1326864
End: 1329119
Strand: Reverse
Name: comEC [H]
Synonym: CYA_1316
Alternate gene names: 86605994
Gene position: 1329119-1326864 (Counterclockwise)
Preceding gene: 86605997
Following gene: 90296795
Centisome position: 45.32
GC content: 67.11
Gene sequence:
>2256_bases ATGGAGAGAACCTATCTGCTGGGGCTGGGCTGGATCCTGGGCCTGTTGCTGCGGGCCTGGCCGGCGGCGAGCGGCTGGGG CTGGGGGATCCCGCTGGCTTTGGGATTGGCGGGATCGCTGCTGTACCGGCGACGACCGCGCTTGGCCCGCACCTGGCTGG CGATGGGGCTGGTGGGGTGTCTGGCCTGGGCCTACCTGGGCTGGCGGCAGCCGGTTCCCGGCCCGACGGATATCAGCCTT CTGGCCCCGCAGCGGCAGATGAGCCTGGTGGGCACCGTTCTTTCGGAGCCCCGCCCCACCCGCAGCGAGCGGCGGCAATT TTGGCTGGAGGCGGAGCAGGTGCTGGAGGCCAACCAAACGGCCCGCCAGGTAAGCGGCAAGCTCTACGTCACTGCCAGCC CTGAGGCTCTCCCAAGCCAGGATCTCCATCCCAACCAGCGGGTGCGCCTGACGGGATCCCTCTACCTTCCCAGTCCCGCC TTAAACCCGGGCAGCTTTGACTTTCAGGCCTATCTGCAGCGGCAGGGGGCTTTTGCCGGCTTCATCGCCCGCGAGGTGAT CCCCCAGCCGGGGGGAAGGGGCTGGGGAGGTTGGGTGCTGCGGCGGCGGGTGCGGGAGGCGTTCATTGCCGGGCTGGGGG AGCGGCAGGGGAACCTCTTGGCTTCCTTGGTGCTGGGATCCCGGGCTGCCCAGTTGGATTTTGATTTGCAGGATGCCTTT CGAGAAGTTGGCCTGGCCCATGCGCTAGCGGCCTCTGGGTTTCACGTGTCGCTGCTGGTGGGGGTGGTGTTTGTCCTAAC GCGGCGGCTGGCGGTACGCCTGCAGCAGGGGATCCTCCTGGCGGTCTTGGGGATTTACCTGGCCTTGACGGGCTTTACCC CTTCGGTGCTGCGGGCGGCGGTGATGGGGGCAGCGGCCATGCTGGTGTTGACGGAGCCAAGACTGGAAGGAAAAGTTAGG CTTAACCCCCTGGGGACGCTGCTGGTGGCGGCGGTTTTGCTGTTGATCTACCAGCCGCTGTGGATTACCGATCTGGGGTT TCAGCTCAGCTTTGCCGCCACCCTGGGCCTGCTGGTGGGGGCAGGGCCGATTGGATCCCGGCTGGACTTTTTGCCGCCGG CGGTGGCCACGGCTCTGGCCGTTCCGCTGGCCGCCCAGATCTGGACGCTGCCGCTGCAGGTGGCCATCTTTGGCCGCATC CCCACCTACTCGCTGCTGGCCAACCCGCTGCTGCTGCTTCTCTTGGTGCCCCTGCTGGTGGCGGGGTTTGGGGTGGCTTT TGTGGCCTTGCTCTGGCCGGGGCTGGGATCCCTGCTGGCCCGGCCCTTGACGTTTTTGATCACGCCTTTGATCAACTGGG TGGGCTGGATGGCCAGCTGGCCCCTGAGCTCCTACTACACCGGCAGGGTCTCGCTGCTCCAGTGTCTACTTCTCTACGGG GCGCTGGTGGCTTTGACCTTTTGGCCCCGCTGGCGGCGGGCTTTGCGCTGGCAGGGCACTGCTCTGATAATGGCCGCCAT CCTCTTGGGGCCAAGGCTGTGGCCGGGGCCGCCGGTCGAGATCACCGCTTTGGCCAGTGGCCGCCTCCCCGTCCTGGCCA TCCAAGCCGAAGGACGCCACCTCTTGCTCAACAGCGGCGATCCCCGCCTGGCCGAGCGCACCGTGTTGCCCTTTTTGCGG CAGCAGGGCCTGCGCCGTCTGGAGGGGGCGGTGGCCATGACCTCTGCCGGCTCGGCCAATGGGGGCTGGGAGATCCTGCT TTCAGCTTTCTCCATCGGGCAGTTCTGGGACGGGGGCGGCGTCAATGCCGCCTCGGACAGCTACCTGCGCTCTCTTAGCG CCGTGCAAGCTGCCGGGATCCCCTATCAAGTCTTGCGGCCTGCCGACCGGATCCCCTTCTCGGAGCGGCTGAAGCTGCAG GCCGTCCACACCAACCCCTTGGTGTTGACCTTGGAGGCCGAGGGATCCCGCTGGCTGCTCTTGGGATCCGCCGGCCCCCC TGTCCAGGCGGAGCTGACCGGATCCCCCTTGCTGCCGGCCCAGATCGACTGGCTGTGGTGGGATGGGGGATCGCTGATCC TGGACTTGCTGGAGCGCTTTCAGGTGCAGGCGGGCATCAGCTCCGGCCCTGTTGGCGAGGCAGTGACCACCTGGTTTCGG CAAAAGCAGCGGCCCCTCTACATTGCCGAGCGCGTTGGAGCAGTAACCTGGTCGCCCCGGGGCGTGCAAACCCTGCGGGC GCCACTGGACGGATAG
Upstream 100 bases:
>100_bases GCCTCTGTCTTGCGGGGTCGGCAACCGGTCAAGGTTAAGACAACGCCATGGATCCCGCCTGAGCGCGAGAGTACAGTGGG GGCAAAAGCGCTGAAGAGGG
Downstream 100 bases:
>100_bases GTGGCTTGGGGGAGAAGGGCTTAGGCGACAGCTCAAGGCTGGATCAAAAGTTACTGATACATTTACGCTGAACACTGCTG AACATCACTGTTCAACTATG
Product: DNA internalization competence protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MERTYLLGLGWILGLLLRAWPAASGWGWGIPLALGLAGSLLYRRRPRLARTWLAMGLVGCLAWAYLGWRQPVPGPTDISL LAPQRQMSLVGTVLSEPRPTRSERRQFWLEAEQVLEANQTARQVSGKLYVTASPEALPSQDLHPNQRVRLTGSLYLPSPA LNPGSFDFQAYLQRQGAFAGFIAREVIPQPGGRGWGGWVLRRRVREAFIAGLGERQGNLLASLVLGSRAAQLDFDLQDAF REVGLAHALAASGFHVSLLVGVVFVLTRRLAVRLQQGILLAVLGIYLALTGFTPSVLRAAVMGAAAMLVLTEPRLEGKVR LNPLGTLLVAAVLLLIYQPLWITDLGFQLSFAATLGLLVGAGPIGSRLDFLPPAVATALAVPLAAQIWTLPLQVAIFGRI PTYSLLANPLLLLLLVPLLVAGFGVAFVALLWPGLGSLLARPLTFLITPLINWVGWMASWPLSSYYTGRVSLLQCLLLYG ALVALTFWPRWRRALRWQGTALIMAAILLGPRLWPGPPVEITALASGRLPVLAIQAEGRHLLLNSGDPRLAERTVLPFLR QQGLRRLEGAVAMTSAGSANGGWEILLSAFSIGQFWDGGGVNAASDSYLRSLSAVQAAGIPYQVLRPADRIPFSERLKLQ AVHTNPLVLTLEAEGSRWLLLGSAGPPVQAELTGSPLLPAQIDWLWWDGGSLILDLLERFQVQAGISSGPVGEAVTTWFR QKQRPLYIAERVGAVTWSPRGVQTLRAPLDG
Sequences:
>Translated_751_residues MERTYLLGLGWILGLLLRAWPAASGWGWGIPLALGLAGSLLYRRRPRLARTWLAMGLVGCLAWAYLGWRQPVPGPTDISL LAPQRQMSLVGTVLSEPRPTRSERRQFWLEAEQVLEANQTARQVSGKLYVTASPEALPSQDLHPNQRVRLTGSLYLPSPA LNPGSFDFQAYLQRQGAFAGFIAREVIPQPGGRGWGGWVLRRRVREAFIAGLGERQGNLLASLVLGSRAAQLDFDLQDAF REVGLAHALAASGFHVSLLVGVVFVLTRRLAVRLQQGILLAVLGIYLALTGFTPSVLRAAVMGAAAMLVLTEPRLEGKVR LNPLGTLLVAAVLLLIYQPLWITDLGFQLSFAATLGLLVGAGPIGSRLDFLPPAVATALAVPLAAQIWTLPLQVAIFGRI PTYSLLANPLLLLLLVPLLVAGFGVAFVALLWPGLGSLLARPLTFLITPLINWVGWMASWPLSSYYTGRVSLLQCLLLYG ALVALTFWPRWRRALRWQGTALIMAAILLGPRLWPGPPVEITALASGRLPVLAIQAEGRHLLLNSGDPRLAERTVLPFLR QQGLRRLEGAVAMTSAGSANGGWEILLSAFSIGQFWDGGGVNAASDSYLRSLSAVQAAGIPYQVLRPADRIPFSERLKLQ AVHTNPLVLTLEAEGSRWLLLGSAGPPVQAELTGSPLLPAQIDWLWWDGGSLILDLLERFQVQAGISSGPVGEAVTTWFR QKQRPLYIAERVGAVTWSPRGVQTLRAPLDG >Mature_751_residues MERTYLLGLGWILGLLLRAWPAASGWGWGIPLALGLAGSLLYRRRPRLARTWLAMGLVGCLAWAYLGWRQPVPGPTDISL LAPQRQMSLVGTVLSEPRPTRSERRQFWLEAEQVLEANQTARQVSGKLYVTASPEALPSQDLHPNQRVRLTGSLYLPSPA LNPGSFDFQAYLQRQGAFAGFIAREVIPQPGGRGWGGWVLRRRVREAFIAGLGERQGNLLASLVLGSRAAQLDFDLQDAF REVGLAHALAASGFHVSLLVGVVFVLTRRLAVRLQQGILLAVLGIYLALTGFTPSVLRAAVMGAAAMLVLTEPRLEGKVR LNPLGTLLVAAVLLLIYQPLWITDLGFQLSFAATLGLLVGAGPIGSRLDFLPPAVATALAVPLAAQIWTLPLQVAIFGRI PTYSLLANPLLLLLLVPLLVAGFGVAFVALLWPGLGSLLARPLTFLITPLINWVGWMASWPLSSYYTGRVSLLQCLLLYG ALVALTFWPRWRRALRWQGTALIMAAILLGPRLWPGPPVEITALASGRLPVLAIQAEGRHLLLNSGDPRLAERTVLPFLR QQGLRRLEGAVAMTSAGSANGGWEILLSAFSIGQFWDGGGVNAASDSYLRSLSAVQAAGIPYQVLRPADRIPFSERLKLQ AVHTNPLVLTLEAEGSRWLLLGSAGPPVQAELTGSPLLPAQIDWLWWDGGSLILDLLERFQVQAGISSGPVGEAVTTWFR QKQRPLYIAERVGAVTWSPRGVQTLRAPLDG
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 81364; Mature: 81364
Theoretical pI: Translated: 11.14; Mature: 11.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERTYLLGLGWILGLLLRAWPAASGWGWGIPLALGLAGSLLYRRRPRLARTWLAMGLVGC CCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LAWAYLGWRQPVPGPTDISLLAPQRQMSLVGTVLSEPRPTRSERRQFWLEAEQVLEANQT HHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ARQVSGKLYVTASPEALPSQDLHPNQRVRLTGSLYLPSPALNPGSFDFQAYLQRQGAFAG HHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCHHH FIAREVIPQPGGRGWGGWVLRRRVREAFIAGLGERQGNLLASLVLGSRAAQLDFDLQDAF HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCHHHHH REVGLAHALAASGFHVSLLVGVVFVLTRRLAVRLQQGILLAVLGIYLALTGFTPSVLRAA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VMGAAAMLVLTEPRLEGKVRLNPLGTLLVAAVLLLIYQPLWITDLGFQLSFAATLGLLVG HHHHHHEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHC AGPIGSRLDFLPPAVATALAVPLAAQIWTLPLQVAIFGRIPTYSLLANPLLLLLLVPLLV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHH AGFGVAFVALLWPGLGSLLARPLTFLITPLINWVGWMASWPLSSYYTGRVSLLQCLLLYG HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHH ALVALTFWPRWRRALRWQGTALIMAAILLGPRLWPGPPVEITALASGRLPVLAIQAEGRH HHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCCE LLLNSGDPRLAERTVLPFLRQQGLRRLEGAVAMTSAGSANGGWEILLSAFSIGQFWDGGG EEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCC VNAASDSYLRSLSAVQAAGIPYQVLRPADRIPFSERLKLQAVHTNPLVLTLEAEGSRWLL CCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHCEEEEEEECCCEEEEEECCCCEEEE LGSAGPPVQAELTGSPLLPAQIDWLWWDGGSLILDLLERFQVQAGISSGPVGEAVTTWFR EECCCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH QKQRPLYIAERVGAVTWSPRGVQTLRAPLDG HCCCCEEHHHHCCCCEECCCCHHHHHCCCCC >Mature Secondary Structure MERTYLLGLGWILGLLLRAWPAASGWGWGIPLALGLAGSLLYRRRPRLARTWLAMGLVGC CCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LAWAYLGWRQPVPGPTDISLLAPQRQMSLVGTVLSEPRPTRSERRQFWLEAEQVLEANQT HHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ARQVSGKLYVTASPEALPSQDLHPNQRVRLTGSLYLPSPALNPGSFDFQAYLQRQGAFAG HHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCHHH FIAREVIPQPGGRGWGGWVLRRRVREAFIAGLGERQGNLLASLVLGSRAAQLDFDLQDAF HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCHHHHH REVGLAHALAASGFHVSLLVGVVFVLTRRLAVRLQQGILLAVLGIYLALTGFTPSVLRAA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VMGAAAMLVLTEPRLEGKVRLNPLGTLLVAAVLLLIYQPLWITDLGFQLSFAATLGLLVG HHHHHHEEEEECCCCCCEEEECHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHC AGPIGSRLDFLPPAVATALAVPLAAQIWTLPLQVAIFGRIPTYSLLANPLLLLLLVPLLV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHH AGFGVAFVALLWPGLGSLLARPLTFLITPLINWVGWMASWPLSSYYTGRVSLLQCLLLYG HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHH ALVALTFWPRWRRALRWQGTALIMAAILLGPRLWPGPPVEITALASGRLPVLAIQAEGRH HHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEECCCCE LLLNSGDPRLAERTVLPFLRQQGLRRLEGAVAMTSAGSANGGWEILLSAFSIGQFWDGGG EEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCC VNAASDSYLRSLSAVQAAGIPYQVLRPADRIPFSERLKLQAVHTNPLVLTLEAEGSRWLL CCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHCEEEEEEECCCEEEEEECCCCEEEE LGSAGPPVQAELTGSPLLPAQIDWLWWDGGSLILDLLERFQVQAGISSGPVGEAVTTWFR EECCCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH QKQRPLYIAERVGAVTWSPRGVQTLRAPLDG HCCCCEEHHHHCCCCEECCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]