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The map label for this gene is ccsA [H]

Identifier: 86605923

GI number: 86605923

Start: 1251335

End: 1252369

Strand: Reverse

Name: ccsA [H]

Synonym: CYA_1240

Alternate gene names: 86605923

Gene position: 1252369-1251335 (Counterclockwise)

Preceding gene: 86605926

Following gene: 86605922

Centisome position: 42.7

GC content: 61.55

Gene sequence:

>1035_bases
GTGTTGGCGATAACGGCCCTTGCAGGCCTGGATCTAGCTCAGTGGCAGGCTTTGCTCAACAACGTGGCCTTTGCCGTTTG
CTTAGGGGCCATGCTGTTTTATTGGGGCGGGGCAGCGTTTCCCCAGGTGCAGCTTCTGTCGGAGCTGGGCTTGGCGGGGA
TGATCGGGGCGAACTTGACGATCGCCGCCCTGCTGACGGCCCGCTGGATCGATGCCGGCTATTTCCCCTTGAGTAACTTG
TACGAGTCTTTGTTTTTCTTGGCCTGGGGGATCACCGCCTTGCATCTGCTGGCTCTCCACTGGACTCGTAGCCGTTGGGT
GGGGGTGACGACCGCCCCGCTGGCGACGGGCGTTGTGGCCTTTGCCGCCCTGGCCCTGCCGGCAGATATGCAGGAGGCCC
AGCCACTGGTGCCGGCTTTGCAATCCAACTGGCTGATGATGCATGTAACGGTGATGCTTCTGGCCTATGCAGCCCTCTTG
GTGGGATCCCTTTTGGCCATCGCTTTTCTCATCGTCACCCGCGGCCAGGAAGTTCAGTTAAAGGGCAACTCCCTCGGCCT
GCAATTTGGACCCTCCCAGCCTGCAACCCACCCCGAATGGACAGAAGCCACCCTGCCATCGCCCGCTGCAGAACTGGTCT
ACGCCGGGATCCGCTCCCCCCGACCGGCTGAACCCCCTCCCCAACCGGCACCCGAAGGGATCCCGCTGCAACGGCTGAGC
CTGGCGGAAATCTTAGACAACACCAGCTACCGGCTAATCGGGCTGGGGTTCCCGCTGCTGACCATCGGCATCATTGCCGG
CGCCGTCTGGGCCAACGAAGCCTGGGGCACCTACTGGAGCTGGGATCCCAAAGAAACCTGGGCCTTGATCACCTGGTTGG
TCTTTGCCGCCTATTTGCACGCCCGCATCACCAAAGGCTGGCAGGGCAAGCGCCCCGCTCTCTTGGCCAGCTTGGGCTTT
GGGGTGGTTTGGGTGTGTTATCTGGGGGTGAACTTTCTGGGCAAAGGCTTACACAGCTATGGCTGGTTCTTCTGA

Upstream 100 bases:

>100_bases
AGCATGTGTCCTTTGGGGAAGATCCCCTCCCCCGCCCTAGAATGGGATCAGCGGTCTGGCCCAAGCCAGGTCAGGAGAAC
TTCTGAGGTCAGGTATGGCT

Downstream 100 bases:

>100_bases
GATCTCTTGGGCCAACAAATCAACCCCCGTTTGTGGGTATTCTGGTGCTGGCAAGCCGTCGTGGATCCCTCTGAGGAGAA
AAGCATGCGACTGTTCAACT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MLAITALAGLDLAQWQALLNNVAFAVCLGAMLFYWGGAAFPQVQLLSELGLAGMIGANLTIAALLTARWIDAGYFPLSNL
YESLFFLAWGITALHLLALHWTRSRWVGVTTAPLATGVVAFAALALPADMQEAQPLVPALQSNWLMMHVTVMLLAYAALL
VGSLLAIAFLIVTRGQEVQLKGNSLGLQFGPSQPATHPEWTEATLPSPAAELVYAGIRSPRPAEPPPQPAPEGIPLQRLS
LAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLHARITKGWQGKRPALLASLGF
GVVWVCYLGVNFLGKGLHSYGWFF

Sequences:

>Translated_344_residues
MLAITALAGLDLAQWQALLNNVAFAVCLGAMLFYWGGAAFPQVQLLSELGLAGMIGANLTIAALLTARWIDAGYFPLSNL
YESLFFLAWGITALHLLALHWTRSRWVGVTTAPLATGVVAFAALALPADMQEAQPLVPALQSNWLMMHVTVMLLAYAALL
VGSLLAIAFLIVTRGQEVQLKGNSLGLQFGPSQPATHPEWTEATLPSPAAELVYAGIRSPRPAEPPPQPAPEGIPLQRLS
LAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLHARITKGWQGKRPALLASLGF
GVVWVCYLGVNFLGKGLHSYGWFF
>Mature_344_residues
MLAITALAGLDLAQWQALLNNVAFAVCLGAMLFYWGGAAFPQVQLLSELGLAGMIGANLTIAALLTARWIDAGYFPLSNL
YESLFFLAWGITALHLLALHWTRSRWVGVTTAPLATGVVAFAALALPADMQEAQPLVPALQSNWLMMHVTVMLLAYAALL
VGSLLAIAFLIVTRGQEVQLKGNSLGLQFGPSQPATHPEWTEATLPSPAAELVYAGIRSPRPAEPPPQPAPEGIPLQRLS
LAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLHARITKGWQGKRPALLASLGF
GVVWVCYLGVNFLGKGLHSYGWFF

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 37233; Mature: 37233

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAITALAGLDLAQWQALLNNVAFAVCLGAMLFYWGGAAFPQVQLLSELGLAGMIGANLT
CEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCHH
IAALLTARWIDAGYFPLSNLYESLFFLAWGITALHLLALHWTRSRWVGVTTAPLATGVVA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FAALALPADMQEAQPLVPALQSNWLMMHVTVMLLAYAALLVGSLLAIAFLIVTRGQEVQL
HHHHHCCCCHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
KGNSLGLQFGPSQPATHPEWTEATLPSPAAELVYAGIRSPRPAEPPPQPAPEGIPLQRLS
CCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
LAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLH
HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ARITKGWQGKRPALLASLGFGVVWVCYLGVNFLGKGLHSYGWFF
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLAITALAGLDLAQWQALLNNVAFAVCLGAMLFYWGGAAFPQVQLLSELGLAGMIGANLT
CEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCHH
IAALLTARWIDAGYFPLSNLYESLFFLAWGITALHLLALHWTRSRWVGVTTAPLATGVVA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FAALALPADMQEAQPLVPALQSNWLMMHVTVMLLAYAALLVGSLLAIAFLIVTRGQEVQL
HHHHHCCCCHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
KGNSLGLQFGPSQPATHPEWTEATLPSPAAELVYAGIRSPRPAEPPPQPAPEGIPLQRLS
CCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
LAEILDNTSYRLIGLGFPLLTIGIIAGAVWANEAWGTYWSWDPKETWALITWLVFAAYLH
HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ARITKGWQGKRPALLASLGFGVVWVCYLGVNFLGKGLHSYGWFF
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA