Click here to switch to the map view.

The map label for this gene is rpmC

Identifier: 86605858

GI number: 86605858

Start: 1187954

End: 1188190

Strand: Reverse

Name: rpmC

Synonym: CYA_1170

Alternate gene names: 86605858

Gene position: 1188190-1187954 (Counterclockwise)

Preceding gene: 86605859

Following gene: 86605857

Centisome position: 40.51

GC content: 57.38

Gene sequence:

>237_bases
ATGCCCATGCCTAAAATTGCCGACGCTCGCGCCCTATCCGACGAAGAATTGAGCCAGGAGATCTACGCCGTCAAGAAAGA
GCTGTTCGAGCTGCGTTTGCAGCAGGCCACGCGGCAGTTGAACCAGCCCCATCTCATTCGCCTGCGCAAACACAAGCTGG
CCCAACTGCTGACCGTTGAGTCAGAGCGCAAGCGCGGCAAGTCCTTGTCCTCAACTCAGACCCAGAAGGAGGAGTAA

Upstream 100 bases:

>100_bases
TAACCAAGGCTAACTTTGAGGAGCCGGAACCTGTTCAGAAAGCAGCTCCAGAAACAACAGAAGTAGCAGCCAGCGCTATT
TGAGGGAGGAGAGTTGAGCC

Downstream 100 bases:

>100_bases
TGCCTGCTCGCGAAAAGATCGGCGTTGTCGTCAGCAACAAGATGCAAAAGACAGTGGTCGTTGCTGTGGAAAACCGGGTT
GCCCACCCCAAATACGGCAA

Product: 50S ribosomal protein L29

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MPMPKIADARALSDEELSQEIYAVKKELFELRLQQATRQLNQPHLIRLRKHKLAQLLTVESERKRGKSLSSTQTQKEE

Sequences:

>Translated_78_residues
MPMPKIADARALSDEELSQEIYAVKKELFELRLQQATRQLNQPHLIRLRKHKLAQLLTVESERKRGKSLSSTQTQKEE
>Mature_77_residues
PMPKIADARALSDEELSQEIYAVKKELFELRLQQATRQLNQPHLIRLRKHKLAQLLTVESERKRGKSLSSTQTQKEE

Specific function: Unknown

COG id: COG0255

COG function: function code J; Ribosomal protein L29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L29P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL29_SYNJA (Q2JV89)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_474621.1
- ProteinModelPortal:   Q2JV89
- SMR:   Q2JV89
- STRING:   Q2JV89
- GeneID:   3898879
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1170
- TIGR:   CYA_1170
- eggNOG:   COG0255
- HOGENOM:   HBG730819
- OMA:   NTHRFKE
- ProtClustDB:   PRK00306
- BioCyc:   SSP321327:CYA_1170-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00374_B
- InterPro:   IPR001854
- Gene3D:   G3DSA:1.10.287.310
- TIGRFAMs:   TIGR00012

Pfam domain/function: PF00831 Ribosomal_L29; SSF46561 Ribosomal_L29

EC number: NA

Molecular weight: Translated: 9113; Mature: 8981

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMPKIADARALSDEELSQEIYAVKKELFELRLQQATRQLNQPHLIRLRKHKLAQLLTVE
CCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SERKRGKSLSSTQTQKEE
HHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PMPKIADARALSDEELSQEIYAVKKELFELRLQQATRQLNQPHLIRLRKHKLAQLLTVE
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SERKRGKSLSSTQTQKEE
HHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA