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The map label for this gene is cph2 [H]

Identifier: 86605819

GI number: 86605819

Start: 1156649

End: 1157719

Strand: Reverse

Name: cph2 [H]

Synonym: CYA_1130

Alternate gene names: 86605819

Gene position: 1157719-1156649 (Counterclockwise)

Preceding gene: 86605820

Following gene: 86605817

Centisome position: 39.48

GC content: 60.88

Gene sequence:

>1071_bases
ATGTCTTGTCTTGACTGCCCAGCTCTGCCCACCTTTTTGCAGGAGGCAGGGCGTTTGTTTCTCTGGCTGCCCACTCCTCA
TACCCACCGGAAAATCTGGCAGGCCCTGGAGGCCAAGACAGAGGTTCCCGTTCAACTTTTGGAAGACCTTGGCCTAGTTG
TTGCCATTGCCCAGGGGGCCCTCAAGAAGACCCTGGAGACAATGGCCGAGGTTCTCTCCCAAGAAGAGATGCAGGCCAGC
CGCGCCTTGTTTTTGCCTGGGGATAGGGATCCCTGCTGGCAAGATTGCGCCCGGGTGGAGTCGTTGCTGCAGTTGTTCCA
CCGCACCCAAGCCGAGCTGTTGTTGGAATTGTTGAAGGAAAACCGCCTCACCACCTATTTCCAGCCCATTGTCCGGGCGC
GGGATCCCGCTTGGGTGGTGGGCCACGAAGCGCTGGTGCGGGGGTTGGACAGAGAGGGCAAGGTCATTGGCCCGGACTTG
CTTTTTGCCACGGCCCGCGAAGCCGGGTTGCTCTATCACCTGGACTTGGCTGCCCGCCGCACGGCCATTGCTGCCGCCAC
CCAGCACCGCCTCGAGGGGGATCTGTTCATCAACTTCAGCCCCACGGCCATTTACGACCCAGCCTTTTGCCTGCGCTCTA
CTGTCTGGGCCATCAGCCGCGCCGGGATCCCGCCAGAACGGGTGGTGTTTGAGGTCAATGAATCCGACCGCAGCCCCGAT
TTGGATCATTTGCAGTGGATTTTGCGGTTTTACCGGCAGGCGGGCTTTCGGGTGGCGCTGGATGACCTGGGCGCCGGCTA
CGGATCCCTAAACCTGTTGCACCGGTTGCAGCCAGATGTCATCAAGCTGGATAGGGAGCTCATTCGCGGCGTAGATGGGG
ATCCCTACAAGGCGGTGATTGCCCAAAAGGTGCTGGAGCTGGCCCAAGAGCTGGGGATCGTCACCCTGGCCGAAGGGATC
GAGACGGCAGAGGAGCTGCAGTGGGTGCGCGACCACGGGGTGGACCTGGTGCAGGGCTTTTTCATCGCCCGGCCCCAGCC
TGTTCCCCCAAGATTAGGATCCATAGGATAG

Upstream 100 bases:

>100_bases
GCTTTCCGTAAGATTGGCTTCTTTTTTCGGGAAGGCGGGACATACTGCTAAGTAAGATAGGTAACCTCGGTGGGCCTGCA
TGGCTACTCCCTAAGCCCCC

Downstream 100 bases:

>100_bases
CTGCCCCCACGGCTTGAGCGGCTACTGAGAAGATGACCAAAGCTGGGAGGAAGAGATCGTAGAGCACCCCCATCAGGGCG
CTGCCCAAAAACCAGGCCAG

Product: EAL domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSCLDCPALPTFLQEAGRLFLWLPTPHTHRKIWQALEAKTEVPVQLLEDLGLVVAIAQGALKKTLETMAEVLSQEEMQAS
RALFLPGDRDPCWQDCARVESLLQLFHRTQAELLLELLKENRLTTYFQPIVRARDPAWVVGHEALVRGLDREGKVIGPDL
LFATAREAGLLYHLDLAARRTAIAAATQHRLEGDLFINFSPTAIYDPAFCLRSTVWAISRAGIPPERVVFEVNESDRSPD
LDHLQWILRFYRQAGFRVALDDLGAGYGSLNLLHRLQPDVIKLDRELIRGVDGDPYKAVIAQKVLELAQELGIVTLAEGI
ETAEELQWVRDHGVDLVQGFFIARPQPVPPRLGSIG

Sequences:

>Translated_356_residues
MSCLDCPALPTFLQEAGRLFLWLPTPHTHRKIWQALEAKTEVPVQLLEDLGLVVAIAQGALKKTLETMAEVLSQEEMQAS
RALFLPGDRDPCWQDCARVESLLQLFHRTQAELLLELLKENRLTTYFQPIVRARDPAWVVGHEALVRGLDREGKVIGPDL
LFATAREAGLLYHLDLAARRTAIAAATQHRLEGDLFINFSPTAIYDPAFCLRSTVWAISRAGIPPERVVFEVNESDRSPD
LDHLQWILRFYRQAGFRVALDDLGAGYGSLNLLHRLQPDVIKLDRELIRGVDGDPYKAVIAQKVLELAQELGIVTLAEGI
ETAEELQWVRDHGVDLVQGFFIARPQPVPPRLGSIG
>Mature_355_residues
SCLDCPALPTFLQEAGRLFLWLPTPHTHRKIWQALEAKTEVPVQLLEDLGLVVAIAQGALKKTLETMAEVLSQEEMQASR
ALFLPGDRDPCWQDCARVESLLQLFHRTQAELLLELLKENRLTTYFQPIVRARDPAWVVGHEALVRGLDREGKVIGPDLL
FATAREAGLLYHLDLAARRTAIAAATQHRLEGDLFINFSPTAIYDPAFCLRSTVWAISRAGIPPERVVFEVNESDRSPDL
DHLQWILRFYRQAGFRVALDDLGAGYGSLNLLHRLQPDVIKLDRELIRGVDGDPYKAVIAQKVLELAQELGIVTLAEGIE
TAEELQWVRDHGVDLVQGFFIARPQPVPPRLGSIG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=30.6382978723404, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=30.2681992337165, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=26.9387755102041, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI226510982, Length=246, Percent_Identity=31.7073170731707, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081980, Length=237, Percent_Identity=27.0042194092827, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081743, Length=234, Percent_Identity=30.3418803418803, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787410, Length=225, Percent_Identity=29.7777777777778, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87082096, Length=234, Percent_Identity=26.0683760683761, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=25.6916996047431, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=239, Percent_Identity=27.6150627615063, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=25, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787055, Length=227, Percent_Identity=26.8722466960352, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081921, Length=252, Percent_Identity=24.2063492063492, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39881; Mature: 39750

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCLDCPALPTFLQEAGRLFLWLPTPHTHRKIWQALEAKTEVPVQLLEDLGLVVAIAQGA
CCCCCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LKKTLETMAEVLSQEEMQASRALFLPGDRDPCWQDCARVESLLQLFHRTQAELLLELLKE
HHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRLTTYFQPIVRARDPAWVVGHEALVRGLDREGKVIGPDLLFATAREAGLLYHLDLAARR
CCHHHHHHHHHHCCCCCEEECHHHHHHCCCCCCCEECCHHHHHHHHHCCEEEEEHHHHHH
TAIAAATQHRLEGDLFINFSPTAIYDPAFCLRSTVWAISRAGIPPERVVFEVNESDRSPD
HHHHHHHHHHCCCCEEEEECCCHHCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCC
LDHLQWILRFYRQAGFRVALDDLGAGYGSLNLLHRLQPDVIKLDRELIRGVDGDPYKAVI
HHHHHHHHHHHHHCCCEEEHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHH
AQKVLELAQELGIVTLAEGIETAEELQWVRDHGVDLVQGFFIARPQPVPPRLGSIG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SCLDCPALPTFLQEAGRLFLWLPTPHTHRKIWQALEAKTEVPVQLLEDLGLVVAIAQGA
CCCCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LKKTLETMAEVLSQEEMQASRALFLPGDRDPCWQDCARVESLLQLFHRTQAELLLELLKE
HHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRLTTYFQPIVRARDPAWVVGHEALVRGLDREGKVIGPDLLFATAREAGLLYHLDLAARR
CCHHHHHHHHHHCCCCCEEECHHHHHHCCCCCCCEECCHHHHHHHHHCCEEEEEHHHHHH
TAIAAATQHRLEGDLFINFSPTAIYDPAFCLRSTVWAISRAGIPPERVVFEVNESDRSPD
HHHHHHHHHHCCCCEEEEECCCHHCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCC
LDHLQWILRFYRQAGFRVALDDLGAGYGSLNLLHRLQPDVIKLDRELIRGVDGDPYKAVI
HHHHHHHHHHHHHCCCEEEHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHH
AQKVLELAQELGIVTLAEGIETAEELQWVRDHGVDLVQGFFIARPQPVPPRLGSIG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]