| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605760
Identifier: 86605760
GI number: 86605760
Start: 1081213
End: 1082940
Strand: Reverse
Name: 86605760
Synonym: CYA_1065
Alternate gene names: NA
Gene position: 1082940-1081213 (Counterclockwise)
Preceding gene: 86605761
Following gene: 86605759
Centisome position: 36.93
GC content: 59.14
Gene sequence:
>1728_bases ATGCGGACTTTTCCTTCTCCGGAGGTGCTCCGTCGGCTGCCGGCTGGGGCTGCCGATGGGGCCATCATTTTGGGTACGTT GGTTCTCCTGGGCTTGGTGGCGCAGGTGGGGGCAGGGACTTTTGAGCGGTTTCAGCCGCCGGCGGTGGTACCTCATATCG ACTTGGATCCGCGCAACCTGCCCTACTACGCCGCCCGCTCCACCTTGCGCATGTTCATCGCCCTCGCCTTTTCCACCCTT TTTACCCTGATCTACGGGTATATCGCCGCCAAAAGCCGCTGGGCGGAGCGAATTTTGATCCCTTTGCTGGACATCCTGCA ATCGGTGCCGGTGTTGGGGTTTCTCTCCATCACCGTTACCGGCTTTATCGCGCTTTTTCCCGGCAGCCTGCTGGGGCTGG AGGCAGCTTCTATCTTCGCCATCTTCACCAGCCAGGTCTGGAACATGACTTTTTCTTTTTACCAATCCTTGCGCACCCTG CCGCAGGAGCTGGTGGAAGCGGTCACCCTCTACCGCCTATCCGGCTGGCAGCGCTTCGTCCAGTTGGAAGTGCCTGCGGC GATGGTGGGCCTCATCTGGAACGCCATGATGAGTTTTGGCGGGGGGTGGTTCTTTGTGGCCGCCAGCGAGGCCATCAGCG TGCTCAACCAGGAATATACGCTGCCGGGGTTGGGATCCTATGTGGAAGCTGCCGTCCAGGCGGAAGATCTGCCCAAGTTG GGTTGGGCGCTTTTGACCATGGCGGTGGTGATTCTGCTGGTGGATCAGCTCTTTTGGCGGCCTCTGGTGGCCTGGTCGGA TAAGTTTCGCCTGGAGCAGAGCGCCGGCGCGGCTGCCCCGGAGTCGTGGCTGTACGATCTGCTAACCACGGCGCGGATCC CACGGCTGATTGGCAATTGGCTAGCTCCCTCCAGAGAATTGGCGGATCGGCTGTTGTCCCATTTAACTCGCCTGCGCTGG GGGGATCCACCCAATCCAGAGGCGGAGCGACGCCGCGAGCGGCTGTTGACTCAGCTCTCTTGGGCTGCCATTGCCGGGAT CGGGATTTGGATTGTTTATTTTGTAACCACCACCGTGGGCTTTGGGGAGGTGCTGCTGACCTTTGGGCTGGGGATCCTCA CCCTGCTGCGGGTCAGCGTGCTGTTGGTTTTCGCCACCGTGATCTGGACGCCGATTGGGGTGGCCATCGGCTTTAATCCA GGCCTGGCGAAGCTGCTGCAGCCGGTGGTGCAATTTCTGGCAGCTTTTCCGGCCAATTTCCTCTTTCCGTTTGCCACCTT GTTTTTTATCCGCACCCAGATCAGCATTGAGTGGGGCAGCATTTTGCTCATGTCGCTCGGTGCGCAGTGGTACATTCTTT TCAATTCCATTGCCGGCGCCCAGAGCATCCCCACCGATTTGCGCGAAATGGCCGTGGATGTGGGCTTGCGGGGATGGCAG CGCTGGCAAAAGCTGATTATTCCGGGGATCTTTTCCGCCTGGGTTACCGGGGGGATCACGGCCAGCGGCGGGGCTTGGAA CGCTAGCATTGTCTCGGAGATCGTGGCCTGGGGATCCACCACTCTTAAGGCTACAGGATTGGGCACCTATATTGCGGAAG CAACGGCGGTGGGAGATTGGCCCCGCATCACTTTGGGCATTGGCATGATGAGCTTGTTTGTGGTGGGCATCAATCGCCTT TTCTGGCGGCGGTTGTATCAATTGGCGGAAGAAAAATATCACCTTTAA
Upstream 100 bases:
>100_bases CGGAGGAAGAGTAGCGGGCCGGATCCTCCAGTTCGAAGCGCTCCTAGCTTAACCGCAAACAGTGTACACTGGGGGCGGAT GCCAGGCCCATTCAGGGGAC
Downstream 100 bases:
>100_bases TCTTTGAGGCCATCTGATATGAGCTCTGCGGCTTCTCCGGTTCTGATCGAGGTTGAGAAGGTCTACAAGCGCTTTCCTTT GCCGGAGGGCAAGGGCGAGT
Product: taurine ABC transporter permease protein
Products: NA
Alternate protein names: ABC Transporter Permease; ABC Transporter Membrane Protein; ABC Transporter Nitrate Permease; ABC Transporter; ABC Anion Transporter; ABC-Type Anion Transport System Permease Component; Anion Transporter Permease Protein; Nitrate ABC Transporter Permease; ABC Transporter Inner Membrane Subunit; ABC Transporter Transmembrane Permease Protein; ABC-Type Anion Transport System; ABC-Type Nitrate Transport Permease; ABC Transport System Permease Protein; Transmembrane ABC Transporter Protein; Nitrate Transport System Permease Protein; Nitrate ABC Transporter Permease Protein; Anion ABC Transporter Permease; Taurine ABC Transporter Permease Protein; Sugar ABC Transporter; Sugar ABC Transporter 1 Permease Protein; Sulfonate Transport Permease Protein; Nitrate Transport System Permease
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MRTFPSPEVLRRLPAGAADGAIILGTLVLLGLVAQVGAGTFERFQPPAVVPHIDLDPRNLPYYAARSTLRMFIALAFSTL FTLIYGYIAAKSRWAERILIPLLDILQSVPVLGFLSITVTGFIALFPGSLLGLEAASIFAIFTSQVWNMTFSFYQSLRTL PQELVEAVTLYRLSGWQRFVQLEVPAAMVGLIWNAMMSFGGGWFFVAASEAISVLNQEYTLPGLGSYVEAAVQAEDLPKL GWALLTMAVVILLVDQLFWRPLVAWSDKFRLEQSAGAAAPESWLYDLLTTARIPRLIGNWLAPSRELADRLLSHLTRLRW GDPPNPEAERRRERLLTQLSWAAIAGIGIWIVYFVTTTVGFGEVLLTFGLGILTLLRVSVLLVFATVIWTPIGVAIGFNP GLAKLLQPVVQFLAAFPANFLFPFATLFFIRTQISIEWGSILLMSLGAQWYILFNSIAGAQSIPTDLREMAVDVGLRGWQ RWQKLIIPGIFSAWVTGGITASGGAWNASIVSEIVAWGSTTLKATGLGTYIAEATAVGDWPRITLGIGMMSLFVVGINRL FWRRLYQLAEEKYHL
Sequences:
>Translated_575_residues MRTFPSPEVLRRLPAGAADGAIILGTLVLLGLVAQVGAGTFERFQPPAVVPHIDLDPRNLPYYAARSTLRMFIALAFSTL FTLIYGYIAAKSRWAERILIPLLDILQSVPVLGFLSITVTGFIALFPGSLLGLEAASIFAIFTSQVWNMTFSFYQSLRTL PQELVEAVTLYRLSGWQRFVQLEVPAAMVGLIWNAMMSFGGGWFFVAASEAISVLNQEYTLPGLGSYVEAAVQAEDLPKL GWALLTMAVVILLVDQLFWRPLVAWSDKFRLEQSAGAAAPESWLYDLLTTARIPRLIGNWLAPSRELADRLLSHLTRLRW GDPPNPEAERRRERLLTQLSWAAIAGIGIWIVYFVTTTVGFGEVLLTFGLGILTLLRVSVLLVFATVIWTPIGVAIGFNP GLAKLLQPVVQFLAAFPANFLFPFATLFFIRTQISIEWGSILLMSLGAQWYILFNSIAGAQSIPTDLREMAVDVGLRGWQ RWQKLIIPGIFSAWVTGGITASGGAWNASIVSEIVAWGSTTLKATGLGTYIAEATAVGDWPRITLGIGMMSLFVVGINRL FWRRLYQLAEEKYHL >Mature_575_residues MRTFPSPEVLRRLPAGAADGAIILGTLVLLGLVAQVGAGTFERFQPPAVVPHIDLDPRNLPYYAARSTLRMFIALAFSTL FTLIYGYIAAKSRWAERILIPLLDILQSVPVLGFLSITVTGFIALFPGSLLGLEAASIFAIFTSQVWNMTFSFYQSLRTL PQELVEAVTLYRLSGWQRFVQLEVPAAMVGLIWNAMMSFGGGWFFVAASEAISVLNQEYTLPGLGSYVEAAVQAEDLPKL GWALLTMAVVILLVDQLFWRPLVAWSDKFRLEQSAGAAAPESWLYDLLTTARIPRLIGNWLAPSRELADRLLSHLTRLRW GDPPNPEAERRRERLLTQLSWAAIAGIGIWIVYFVTTTVGFGEVLLTFGLGILTLLRVSVLLVFATVIWTPIGVAIGFNP GLAKLLQPVVQFLAAFPANFLFPFATLFFIRTQISIEWGSILLMSLGAQWYILFNSIAGAQSIPTDLREMAVDVGLRGWQ RWQKLIIPGIFSAWVTGGITASGGAWNASIVSEIVAWGSTTLKATGLGTYIAEATAVGDWPRITLGIGMMSLFVVGINRL FWRRLYQLAEEKYHL
Specific function: Unknown
COG id: COG4986
COG function: function code P; ABC-type anion transport system, duplicated permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63449; Mature: 63449
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTFPSPEVLRRLPAGAADGAIILGTLVLLGLVAQVGAGTFERFQPPAVVPHIDLDPRNL CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCC PYYAARSTLRMFIALAFSTLFTLIYGYIAAKSRWAERILIPLLDILQSVPVLGFLSITVT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH GFIALFPGSLLGLEAASIFAIFTSQVWNMTFSFYQSLRTLPQELVEAVTLYRLSGWQRFV HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLEVPAAMVGLIWNAMMSFGGGWFFVAASEAISVLNQEYTLPGLGSYVEAAVQAEDLPKL EEECHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH GWALLTMAVVILLVDQLFWRPLVAWSDKFRLEQSAGAAAPESWLYDLLTTARIPRLIGNW HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH LAPSRELADRLLSHLTRLRWGDPPNPEAERRRERLLTQLSWAAIAGIGIWIVYFVTTTVG CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FGEVLLTFGLGILTLLRVSVLLVFATVIWTPIGVAIGFNPGLAKLLQPVVQFLAAFPANF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCHHH LFPFATLFFIRTQISIEWGSILLMSLGAQWYILFNSIAGAQSIPTDLREMAVDVGLRGWQ HHHHHHHHHHHHHHEEHHHHHHHHHHCCHHEEHHHHHCCCCCCCHHHHHHHHHHCHHHHH RWQKLIIPGIFSAWVTGGITASGGAWNASIVSEIVAWGSTTLKATGLGTYIAEATAVGDW HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCC PRITLGIGMMSLFVVGINRLFWRRLYQLAEEKYHL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRTFPSPEVLRRLPAGAADGAIILGTLVLLGLVAQVGAGTFERFQPPAVVPHIDLDPRNL CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCC PYYAARSTLRMFIALAFSTLFTLIYGYIAAKSRWAERILIPLLDILQSVPVLGFLSITVT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH GFIALFPGSLLGLEAASIFAIFTSQVWNMTFSFYQSLRTLPQELVEAVTLYRLSGWQRFV HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLEVPAAMVGLIWNAMMSFGGGWFFVAASEAISVLNQEYTLPGLGSYVEAAVQAEDLPKL EEECHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH GWALLTMAVVILLVDQLFWRPLVAWSDKFRLEQSAGAAAPESWLYDLLTTARIPRLIGNW HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH LAPSRELADRLLSHLTRLRWGDPPNPEAERRRERLLTQLSWAAIAGIGIWIVYFVTTTVG CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FGEVLLTFGLGILTLLRVSVLLVFATVIWTPIGVAIGFNPGLAKLLQPVVQFLAAFPANF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCHHH LFPFATLFFIRTQISIEWGSILLMSLGAQWYILFNSIAGAQSIPTDLREMAVDVGLRGWQ HHHHHHHHHHHHHHEEHHHHHHHHHHCCHHEEHHHHHCCCCCCCHHHHHHHHHHCHHHHH RWQKLIIPGIFSAWVTGGITASGGAWNASIVSEIVAWGSTTLKATGLGTYIAEATAVGDW HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCC PRITLGIGMMSLFVVGINRLFWRRLYQLAEEKYHL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA