| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is hemH
Identifier: 86605730
GI number: 86605730
Start: 1052607
End: 1053632
Strand: Reverse
Name: hemH
Synonym: CYA_1034
Alternate gene names: 86605730
Gene position: 1053632-1052607 (Counterclockwise)
Preceding gene: 86605731
Following gene: 86605729
Centisome position: 35.93
GC content: 64.42
Gene sequence:
>1026_bases ATGTCCAAAAGCGGCGTGCTCCTGCTGAACTTGGGGGGGCCAGAGACCCAGGCTGATGTGCAGCCCTTTCTCTACAACCT CTTTGCCGATCCCGAGCTGATCCGCCTGCCCTTTCCCTTTTTGCAGAGGGCTTTTGCCTGGGCCATCTCCACGCTGCGGG CGCCCAAATCCCGGCGCAACTACGCGGCCATCGGGGGGGGATCCCCTTTGCGGCGCATCACCGCCGCCCAGGCACAAGCG TTGCAGGCTCAACTGGTGGCGGCGGGCTACGACGTGCCGGTGTATGTGGCCATGCGCTATTGGCACCCGCTGATCGAGTC GGTGGTGCAGCAGATCAAGTCGGATGGGATCACCCGCCTGGTGGTGCTGCCGCTCTACCCGCAGTACTCCATCAGCACCA CCGGCTCCAGCTTCAAACTCCTGGATCGCCTCTGGGCCGAAGACCCGGAGCTGGCCCGCATCGAGCGCCGCCAGATCTGC TCTTGGTACGACCAGCCCCAGTATGTCCAGGCCATGGCTAGGGCCATCCGGGAGCAGTTGGATGCCTTCGAGGATCCGGC AGGGGTGCATGTGCTCTTTAGCGCCCACGGCATTCCCGAAAGCTATGTCACCCAGGCCGGGGATCCCTACCAGCAGGAGA TGGAGGCCTGCGTCCAGCTCATCTGGCGGGAAGTTGGGCGCCCCAATCGCCACACCCTCTCCTATCAGAGCCGGGTGGGC TCGGTGCGCTGGCTGCAGCCCTATACCGAGACGGTGATCCCAGAGCTGGGAGCGTGCGGGGTCAGGCAACTGCTGGTGGT GCCGATTAGCTTTGTGTCGGAGCACATCGAAACCCTGCAGGAGATCGACATCGAGTATCGGGAGCTGGCCCACCAGGCTG GGATCCGCGAGTTTCGCCGCGTGCCCGCGTTGAATGCCGACCCGCTGTTTATTGCCGGGCTGGTGGCGTTGGTGCGGCCC CATCTGCTCACTTCAGCACCTGCTTTTGTACCGGCGGCGGTGGGCGGCTCGCTGCTGGAGCGATAG
Upstream 100 bases:
>100_bases CCGAGAGAAAGCTGAGAAAGGTTGCAAGAAAACTTAATGCCCCTTCCCCGCTGGGGGGCAAGACCTCCTACAGTGGATAA GGAAGGTCATTGGGTTTGTC
Downstream 100 bases:
>100_bases CTAAAAGGGATCCAGGCCGCGAGCGGGCCTGGGCAAGCGAGGGTCAAATCCCCAAAAGCAATCGCTTGTTTTTGCGCAGC GGTCAGGTGAGGGTACGGCC
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase [H]
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MSKSGVLLLNLGGPETQADVQPFLYNLFADPELIRLPFPFLQRAFAWAISTLRAPKSRRNYAAIGGGSPLRRITAAQAQA LQAQLVAAGYDVPVYVAMRYWHPLIESVVQQIKSDGITRLVVLPLYPQYSISTTGSSFKLLDRLWAEDPELARIERRQIC SWYDQPQYVQAMARAIREQLDAFEDPAGVHVLFSAHGIPESYVTQAGDPYQQEMEACVQLIWREVGRPNRHTLSYQSRVG SVRWLQPYTETVIPELGACGVRQLLVVPISFVSEHIETLQEIDIEYRELAHQAGIREFRRVPALNADPLFIAGLVALVRP HLLTSAPAFVPAAVGGSLLER
Sequences:
>Translated_341_residues MSKSGVLLLNLGGPETQADVQPFLYNLFADPELIRLPFPFLQRAFAWAISTLRAPKSRRNYAAIGGGSPLRRITAAQAQA LQAQLVAAGYDVPVYVAMRYWHPLIESVVQQIKSDGITRLVVLPLYPQYSISTTGSSFKLLDRLWAEDPELARIERRQIC SWYDQPQYVQAMARAIREQLDAFEDPAGVHVLFSAHGIPESYVTQAGDPYQQEMEACVQLIWREVGRPNRHTLSYQSRVG SVRWLQPYTETVIPELGACGVRQLLVVPISFVSEHIETLQEIDIEYRELAHQAGIREFRRVPALNADPLFIAGLVALVRP HLLTSAPAFVPAAVGGSLLER >Mature_340_residues SKSGVLLLNLGGPETQADVQPFLYNLFADPELIRLPFPFLQRAFAWAISTLRAPKSRRNYAAIGGGSPLRRITAAQAQAL QAQLVAAGYDVPVYVAMRYWHPLIESVVQQIKSDGITRLVVLPLYPQYSISTTGSSFKLLDRLWAEDPELARIERRQICS WYDQPQYVQAMARAIREQLDAFEDPAGVHVLFSAHGIPESYVTQAGDPYQQEMEACVQLIWREVGRPNRHTLSYQSRVGS VRWLQPYTETVIPELGACGVRQLLVVPISFVSEHIETLQEIDIEYRELAHQAGIREFRRVPALNADPLFIAGLVALVRPH LLTSAPAFVPAAVGGSLLER
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=329, Percent_Identity=38.9057750759878, Blast_Score=206, Evalue=3e-53, Organism=Homo sapiens, GI60499025, Length=329, Percent_Identity=38.9057750759878, Blast_Score=206, Evalue=3e-53, Organism=Escherichia coli, GI1786681, Length=326, Percent_Identity=33.1288343558282, Blast_Score=142, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6324750, Length=339, Percent_Identity=35.1032448377581, Blast_Score=174, Evalue=2e-44, Organism=Drosophila melanogaster, GI17864156, Length=326, Percent_Identity=36.1963190184049, Blast_Score=202, Evalue=2e-52, Organism=Drosophila melanogaster, GI24651774, Length=256, Percent_Identity=33.203125, Blast_Score=142, Evalue=3e-34, Organism=Drosophila melanogaster, GI45552018, Length=164, Percent_Identity=40.2439024390244, Blast_Score=122, Evalue=3e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 38141; Mature: 38010
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSGVLLLNLGGPETQADVQPFLYNLFADPELIRLPFPFLQRAFAWAISTLRAPKSRRN CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCC YAAIGGGSPLRRITAAQAQALQAQLVAAGYDVPVYVAMRYWHPLIESVVQQIKSDGITRL EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE VVLPLYPQYSISTTGSSFKLLDRLWAEDPELARIERRQICSWYDQPQYVQAMARAIREQL EEEECCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DAFEDPAGVHVLFSAHGIPESYVTQAGDPYQQEMEACVQLIWREVGRPNRHTLSYQSRVG HHCCCCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCC SVRWLQPYTETVIPELGACGVRQLLVVPISFVSEHIETLQEIDIEYRELAHQAGIREFRR CEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH VPALNADPLFIAGLVALVRPHLLTSAPAFVPAAVGGSLLER CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure SKSGVLLLNLGGPETQADVQPFLYNLFADPELIRLPFPFLQRAFAWAISTLRAPKSRRN CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCC YAAIGGGSPLRRITAAQAQALQAQLVAAGYDVPVYVAMRYWHPLIESVVQQIKSDGITRL EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE VVLPLYPQYSISTTGSSFKLLDRLWAEDPELARIERRQICSWYDQPQYVQAMARAIREQL EEEECCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DAFEDPAGVHVLFSAHGIPESYVTQAGDPYQQEMEACVQLIWREVGRPNRHTLSYQSRVG HHCCCCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCC SVRWLQPYTETVIPELGACGVRQLLVVPISFVSEHIETLQEIDIEYRELAHQAGIREFRR CEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH VPALNADPLFIAGLVALVRPHLLTSAPAFVPAAVGGSLLER CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA