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The map label for this gene is ydcM [C]

Identifier: 86605680

GI number: 86605680

Start: 994257

End: 995468

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0981

Alternate gene names: 86605680

Gene position: 995468-994257 (Counterclockwise)

Preceding gene: 86605681

Following gene: 86605679

Centisome position: 33.94

GC content: 55.03

Gene sequence:

>1212_bases
ATGACCCAAGTCCTGACCGTCTCCTGCAAGCTCAAGGTGTCCCAGTCGCAAGCCGCAAAGTTGGATGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAGTCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAACTTGGCTCAGCAAGTCTGCAGACGGCTGGCCGGTGCCCGTAAA
GTTGCCCAACAGAAAAACCGCCCCGTCAAAGCGTTCAAGAGAGGCTTTGCGACCTACGATGCCCGTATCTTTTCGTTGCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGCTGGCGATTGGCCGCTACCAGAGAG
AACAGTTGGCAGGCTCCAATCCCAAATCTGCCACTCTGGTCAAGCGCAAAGACGGTTCCTACTCCATTCAAATCTGTGTG
GAAGCGGAGCCATCCCCACCGCAACGCACGGATAGAGTGCTGGGGGTGGATTTGGGCAGGACGGATATTGCTCATACATC
GGAAGGAGATAACTGGAATGGACAGCAGTTGAACAAAGTCCGAGACCATCACTCGCGGTTGAGGGCGGTACTTCAACGCA
AAGCCAGTAAGGGCACCCGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGACAAACAGCGCTATTGCTCTGGAAGA
CCTGACAGGGATCCGGAAAAGAGTCAATCAACAGCCACGCAGCAAGACAGAGCGTAGGCGGGCAAATAGTTGGGCGTTTT
ATCAACTCCGTCAATTTTTGGAGTACAAGGCTCTGCGTGCGGGGGTTGCTCTGATTCTTGTTCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACATTCATCCCGACCCTGCGCAATCCTACCGCAGTGGAAAGAAGTTTAAGTGTGGACA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGTCGTAAACCAGCCTAGAG
GTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTTAGCGGTC
GGAGTCGGGTAG

Upstream 100 bases:

>100_bases
GAAGGGATCCCGGAGACCGCCTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
TTTACTCGGCTCTTTGCCCCCATCGGTCTGGAGATCCACGCCGAAACCCCCGCCGAGATTGCCATCAGCATCACCGCCCA
GCTCATCCAGGTGCGACGGG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKRGFATYDARIFSLREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQSRLRATESPLRTALAV
GVG

Sequences:

>Translated_403_residues
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKRGFATYDARIFSLREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQSRLRATESPLRTALAV
GVG
>Mature_402_residues
TQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARKV
AQQKNRPVKAFKRGFATYDARIFSLREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVE
AEPSPPQRTDRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKTERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTSQ
TCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQSRLRATESPLRTALAVG
VG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=232, Percent_Identity=28.8793103448276, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45250; Mature: 45119

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKRGFATYDARIFSLREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTDRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQSRLRATESPLRTALAVGVG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQVLTVSCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKRGFATYDARIFSLREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTDRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCHHCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHHSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCEECCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQSRLRATESPLRTALAVGVG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]