| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is yebA [H]
Identifier: 86605489
GI number: 86605489
Start: 787481
End: 789847
Strand: Reverse
Name: yebA [H]
Synonym: CYA_0782
Alternate gene names: 86605489
Gene position: 789847-787481 (Counterclockwise)
Preceding gene: 86605490
Following gene: 86605488
Centisome position: 26.93
GC content: 63.62
Gene sequence:
>2367_bases ATGGCCTGGCCGCTCCTTTCTCTCCAAAAGGTCTTCATCTACCTGCTGGTGGGGATCGCCTTCACGGCCCTTTGTCTGGG GGATCAGGCCCTGTCGCCGGCGGTTATCGTCCTCTGCTTGGCGGCGGGGGCTGCCAGTTGGTTTTGGGAGCCGCCCCGGA TTAGTTTTGCCCGCTATGCTTCCCTGTGGATGCCCCTGACGGTGAGCGTGTTGGTCAGCTTGGCGGCCCTGGTGCTGGCG GGCGTGCTGCCGCTTTCGGATGGGGCCATAGGCCTGGTGCTTTACCTAACAGGGGCCAAGTTGTTCCAGCGGGAACGGGC AGCAGACCACATCCAGTTGGCGGTGCTGTCTCTGCTGCTGATGGCTATCGCCACCCTCTTCAACGAAGACATCAGCTTTG GGTTTTTATTCCTGCTGTATGTGGGGGTGGGGCTGGTTAACCTCACCCTCTATCACCTGCGCCTGCAGGCGGAGCAGCAC CCGCAGGCGGCCAGCCAAGTCCGCGGGATCGACCTCAGCTTTTTGGGGTTTCTGGGATCCCTGGCCTTGCTGGCAACAAT TCTCTCGGTGGTTTTGTTTTTCCTCTTCCCGCGGCTCAGCTTGGGGATCTTGGGCCGGCAGGCCCGCTCGCCGGTGATGA CCACCGGCTTTGCCGAAGAAGTCAGCCTGGGGGAGTTCGGCACCCTTAAAACCGACAACACCGTTGCCCTGCGGGTGGAG TTCCCGGCAGGGGTGCCCCCCCAGGTGGAGTCCCTCTACTGGCGGGGGATCAGCTTTGATCGCTACGACGGGCGGGCTTG GTCGCGGACGCTGAACCGCGCGATCCCGATTTTCCCCACTGCAGCAGGGGTCTTTGATCTCTCGGCTTCCCCCTTGATCC CCACCGCGAGCGACCTCCAGTTCTTCCCCCTGGAGCAGCGGATTTACCTAGAGCCGCTGGCCACCACCACCGTCTTTGGG GTGGCGCCGCTGCTAGAGGTGGAGTGGCTAGATCGAGGTGGGGCGATGACTCCGCAGCAGGCATGGCAACGGCAAACTCG CCGCCTGCTCCTGCACGAGAGCGGGGATGTCAGCCATTCTCTGCCCCCCCGGCTGCCCTATCTCTACCGCGCCGTGAGCT GGATCCCCCAGGATCTAAGGCCCCGCCTGCGCCAGCTTGGCCGGGAGGAGCTGCTGAGCGCTCTTGACCCAGTCCAGCAA CAAGCCTATCTGCAGTTGCCAGCAGACCTGGATCCGCGCATTCCCGCCTTGGCTGAAGACGTTACCGCTGGGATCCCCAA TGTCTTTGGCAAGGTGACGGCTTTGCAGAACTACCTGCTGGAGAACTACGCCTATACCACCGATCTGCCGGATCCCGGGG CCGAGCCGCCTTTGGAGGCCTTTTTGTTTACCCACCGCCGCGGCCACTGCGAATACTTTGCCACCGCCCTGACGGTGCTG GCCCGCAGCCTCGGCATCCCGGCCCGCGTGGTCAATGGCTTCTTGGGCGGGCGCTGGGTGGCGCAGGAAAAGTACCTGGC GGTGCGCAACGCCGATGCCCACTCGTGGACGGAGATCCCCTTTGGCCCCTATGGATGGATCATCTTCGACGCCACGCCGC CCGAGGCCAATGTCAGCCAGCGGCAAAGCTGGTGGGATCCCCTGCAAGATTTTTACGACAGCCTGCGCTTCCGTTGGTTT AAGTACGTCATCCAGTACGACCTATCCACCCAGCGGCAGATCTGGCGGCAGATTCAGGAGCTGGCCAGCCGCGTGACCGC TCCCCAAAAGCAGGAGGATGTCGTTGCTGCCCTCCGCCGCAGCTTGGTGGGCTGGGGGCAAAGCCTGCAGCAAAACAGCC TGCCGCTGGTGGGGGTGATGGTCATCACTGGCTTCACGGCCTACTGGGGCCGCCGCCGCCGCTACCAGGCCGTGCGCTGG CAGGATGGGGGATGGATCCTCTTGGCCACAGCCGCCAATGGAGTGGTGATGGGATCCCTGTGGCAGCCTCCGCCCCCCTG GCCCACCTGGATGGTTGGCCTCTTGCTACCGAGTCTGGCCTTTGCTGGGATGCGCTGGATCCCGGCGGCTCTACCCAAGT CGCAGCAGCGCCGCCAGCTTATCTCAAGGCTTTATCTGCAACTGCGGGATCTGGCGACGGCGGTGGGGATCCCAGCCCAC CTAGGCCCTGAGGCCTGCCTGGAACACTTGCGCCACTCCGACTTACCACAAGCCCAGGTGGCCATCCAGTTCTTGGAGCG CTACCTGGAGGTGCGCTTCGGTGGGATCCCGTTGGAGGCGGGCGAATTGCAGCGCTGGCAACAGCAATTCAAACAGCTCA GACGAGCATGGCAGCCACTGGCCAAAACCCCCAGAAGAGCCGCCTGA
Upstream 100 bases:
>100_bases CTCCAGGGCGAGCGGGGGTGCCAGCAGGCCGCGTCGGTTTTGGGCAGGGAGCTGGCTTGGCTATCTTGGAAGGGCAACGC AAGGGCTCCTCGAAAAGCCA
Downstream 100 bases:
>100_bases CCAGAAGGACGGCTATGCCCTGGAGCAGGTACCCCAAAAGCCCTGCGAGAAGCCTTGACAGTTATGAGACAGTTAAGAGA TAGTTAACGTTAGTTATAGA
Product: membrane-bound protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 787
Protein sequence:
>788_residues MAWPLLSLQKVFIYLLVGIAFTALCLGDQALSPAVIVLCLAAGAASWFWEPPRISFARYASLWMPLTVSVLVSLAALVLA GVLPLSDGAIGLVLYLTGAKLFQRERAADHIQLAVLSLLLMAIATLFNEDISFGFLFLLYVGVGLVNLTLYHLRLQAEQH PQAASQVRGIDLSFLGFLGSLALLATILSVVLFFLFPRLSLGILGRQARSPVMTTGFAEEVSLGEFGTLKTDNTVALRVE FPAGVPPQVESLYWRGISFDRYDGRAWSRTLNRAIPIFPTAAGVFDLSASPLIPTASDLQFFPLEQRIYLEPLATTTVFG VAPLLEVEWLDRGGAMTPQQAWQRQTRRLLLHESGDVSHSLPPRLPYLYRAVSWIPQDLRPRLRQLGREELLSALDPVQQ QAYLQLPADLDPRIPALAEDVTAGIPNVFGKVTALQNYLLENYAYTTDLPDPGAEPPLEAFLFTHRRGHCEYFATALTVL ARSLGIPARVVNGFLGGRWVAQEKYLAVRNADAHSWTEIPFGPYGWIIFDATPPEANVSQRQSWWDPLQDFYDSLRFRWF KYVIQYDLSTQRQIWRQIQELASRVTAPQKQEDVVAALRRSLVGWGQSLQQNSLPLVGVMVITGFTAYWGRRRRYQAVRW QDGGWILLATAANGVVMGSLWQPPPPWPTWMVGLLLPSLAFAGMRWIPAALPKSQQRRQLISRLYLQLRDLATAVGIPAH LGPEACLEHLRHSDLPQAQVAIQFLERYLEVRFGGIPLEAGELQRWQQQFKQLRRAWQPLAKTPRRAA
Sequences:
>Translated_788_residues MAWPLLSLQKVFIYLLVGIAFTALCLGDQALSPAVIVLCLAAGAASWFWEPPRISFARYASLWMPLTVSVLVSLAALVLA GVLPLSDGAIGLVLYLTGAKLFQRERAADHIQLAVLSLLLMAIATLFNEDISFGFLFLLYVGVGLVNLTLYHLRLQAEQH PQAASQVRGIDLSFLGFLGSLALLATILSVVLFFLFPRLSLGILGRQARSPVMTTGFAEEVSLGEFGTLKTDNTVALRVE FPAGVPPQVESLYWRGISFDRYDGRAWSRTLNRAIPIFPTAAGVFDLSASPLIPTASDLQFFPLEQRIYLEPLATTTVFG VAPLLEVEWLDRGGAMTPQQAWQRQTRRLLLHESGDVSHSLPPRLPYLYRAVSWIPQDLRPRLRQLGREELLSALDPVQQ QAYLQLPADLDPRIPALAEDVTAGIPNVFGKVTALQNYLLENYAYTTDLPDPGAEPPLEAFLFTHRRGHCEYFATALTVL ARSLGIPARVVNGFLGGRWVAQEKYLAVRNADAHSWTEIPFGPYGWIIFDATPPEANVSQRQSWWDPLQDFYDSLRFRWF KYVIQYDLSTQRQIWRQIQELASRVTAPQKQEDVVAALRRSLVGWGQSLQQNSLPLVGVMVITGFTAYWGRRRRYQAVRW QDGGWILLATAANGVVMGSLWQPPPPWPTWMVGLLLPSLAFAGMRWIPAALPKSQQRRQLISRLYLQLRDLATAVGIPAH LGPEACLEHLRHSDLPQAQVAIQFLERYLEVRFGGIPLEAGELQRWQQQFKQLRRAWQPLAKTPRRAA >Mature_787_residues AWPLLSLQKVFIYLLVGIAFTALCLGDQALSPAVIVLCLAAGAASWFWEPPRISFARYASLWMPLTVSVLVSLAALVLAG VLPLSDGAIGLVLYLTGAKLFQRERAADHIQLAVLSLLLMAIATLFNEDISFGFLFLLYVGVGLVNLTLYHLRLQAEQHP QAASQVRGIDLSFLGFLGSLALLATILSVVLFFLFPRLSLGILGRQARSPVMTTGFAEEVSLGEFGTLKTDNTVALRVEF PAGVPPQVESLYWRGISFDRYDGRAWSRTLNRAIPIFPTAAGVFDLSASPLIPTASDLQFFPLEQRIYLEPLATTTVFGV APLLEVEWLDRGGAMTPQQAWQRQTRRLLLHESGDVSHSLPPRLPYLYRAVSWIPQDLRPRLRQLGREELLSALDPVQQQ AYLQLPADLDPRIPALAEDVTAGIPNVFGKVTALQNYLLENYAYTTDLPDPGAEPPLEAFLFTHRRGHCEYFATALTVLA RSLGIPARVVNGFLGGRWVAQEKYLAVRNADAHSWTEIPFGPYGWIIFDATPPEANVSQRQSWWDPLQDFYDSLRFRWFK YVIQYDLSTQRQIWRQIQELASRVTAPQKQEDVVAALRRSLVGWGQSLQQNSLPLVGVMVITGFTAYWGRRRRYQAVRWQ DGGWILLATAANGVVMGSLWQPPPPWPTWMVGLLLPSLAFAGMRWIPAALPKSQQRRQLISRLYLQLRDLATAVGIPAHL GPEACLEHLRHSDLPQAQVAIQFLERYLEVRFGGIPLEAGELQRWQQQFKQLRRAWQPLAKTPRRAA
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002931 [H]
Pfam domain/function: PF01841 Transglut_core [H]
EC number: NA
Molecular weight: Translated: 88265; Mature: 88134
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWPLLSLQKVFIYLLVGIAFTALCLGDQALSPAVIVLCLAAGAASWFWEPPRISFARYA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHCCCCCCCHHHHHH SLWMPLTVSVLVSLAALVLAGVLPLSDGAIGLVLYLTGAKLFQRERAADHIQLAVLSLLL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAIATLFNEDISFGFLFLLYVGVGLVNLTLYHLRLQAEQHPQAASQVRGIDLSFLGFLGS HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHCCCCHHHHHHHHH LALLATILSVVLFFLFPRLSLGILGRQARSPVMTTGFAEEVSLGEFGTLKTDNTVALRVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHCCCCCCCCCCCCCEEEEEEE FPAGVPPQVESLYWRGISFDRYDGRAWSRTLNRAIPIFPTAAGVFDLSASPLIPTASDLQ CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCE FFPLEQRIYLEPLATTTVFGVAPLLEVEWLDRGGAMTPQQAWQRQTRRLLLHESGDVSHS EECCCCHHEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC LPPRLPYLYRAVSWIPQDLRPRLRQLGREELLSALDPVQQQAYLQLPADLDPRIPALAED CCCCHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHCHHHHHHHEECCCCCCCCCCHHHHH VTAGIPNVFGKVTALQNYLLENYAYTTDLPDPGAEPPLEAFLFTHRRGHCEYFATALTVL HHCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH ARSLGIPARVVNGFLGGRWVAQEKYLAVRNADAHSWTEIPFGPYGWIIFDATPPEANVSQ HHHHCCCHHHHHHHHCCEEECCHHHHEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHH RQSWWDPLQDFYDSLRFRWFKYVIQYDLSTQRQIWRQIQELASRVTAPQKQEDVVAALRR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH SLVGWGQSLQQNSLPLVGVMVITGFTAYWGRRRRYQAVRWQDGGWILLATAANGVVMGSL HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCEEECCC WQPPPPWPTWMVGLLLPSLAFAGMRWIPAALPKSQQRRQLISRLYLQLRDLATAVGIPAH CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC LGPEACLEHLRHSDLPQAQVAIQFLERYLEVRFGGIPLEAGELQRWQQQFKQLRRAWQPL CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH AKTPRRAA HCCCCCCC >Mature Secondary Structure AWPLLSLQKVFIYLLVGIAFTALCLGDQALSPAVIVLCLAAGAASWFWEPPRISFARYA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHCCCCCCCHHHHHH SLWMPLTVSVLVSLAALVLAGVLPLSDGAIGLVLYLTGAKLFQRERAADHIQLAVLSLLL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAIATLFNEDISFGFLFLLYVGVGLVNLTLYHLRLQAEQHPQAASQVRGIDLSFLGFLGS HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHCCCCHHHHHHHHH LALLATILSVVLFFLFPRLSLGILGRQARSPVMTTGFAEEVSLGEFGTLKTDNTVALRVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHCCCCCCCCCCCCCEEEEEEE FPAGVPPQVESLYWRGISFDRYDGRAWSRTLNRAIPIFPTAAGVFDLSASPLIPTASDLQ CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCE FFPLEQRIYLEPLATTTVFGVAPLLEVEWLDRGGAMTPQQAWQRQTRRLLLHESGDVSHS EECCCCHHEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC LPPRLPYLYRAVSWIPQDLRPRLRQLGREELLSALDPVQQQAYLQLPADLDPRIPALAED CCCCHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHCHHHHHHHEECCCCCCCCCCHHHHH VTAGIPNVFGKVTALQNYLLENYAYTTDLPDPGAEPPLEAFLFTHRRGHCEYFATALTVL HHCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH ARSLGIPARVVNGFLGGRWVAQEKYLAVRNADAHSWTEIPFGPYGWIIFDATPPEANVSQ HHHHCCCHHHHHHHHCCEEECCHHHHEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHH RQSWWDPLQDFYDSLRFRWFKYVIQYDLSTQRQIWRQIQELASRVTAPQKQEDVVAALRR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH SLVGWGQSLQQNSLPLVGVMVITGFTAYWGRRRRYQAVRWQDGGWILLATAANGVVMGSL HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCEEECCC WQPPPPWPTWMVGLLLPSLAFAGMRWIPAALPKSQQRRQLISRLYLQLRDLATAVGIPAH CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC LGPEACLEHLRHSDLPQAQVAIQFLERYLEVRFGGIPLEAGELQRWQQQFKQLRRAWQPL CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH AKTPRRAA HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969499; 9384377 [H]