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The map label for this gene is ydcM [C]

Identifier: 86605474

GI number: 86605474

Start: 774780

End: 775973

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0767

Alternate gene names: 86605474

Gene position: 775973-774780 (Counterclockwise)

Preceding gene: 86605475

Following gene: 86605473

Centisome position: 26.46

GC content: 55.36

Gene sequence:

>1194_bases
ATGAGCCAAGTCCTGACCATATCCTGCAAGCTCAAGGTGTCCCCGTCGCAAGCCGCCAAATTGGACGCGACTTTGGAGGC
TTTTGGCCAAGCCTTGAACTGGGTCAACCAAAACACACCCGAGAAAGTCGCCAACGCCGTTAAGCTCCAGTCTCTGTGCT
ACCGCGAAATCCGGGCCCGGTTCGGCTTGTCCAGTAACTTGGCTCAACAGGTGTGCAGACGGGTGGCAGGCGCTCGCAAA
GTGGCGAGACAGCGCAACCGTCCGGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGACGCACGTATCTTTTCATTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTTGAAGGGAGAGAACGCTTTGAGCTAGCCATTGGTAACTACCAGAGGG
GAATGCTGGCTGGTTCTAACCCAAAAGCTGCCACCCTAGTCCAGCGGAAGGATGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAAGCCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGACTTGGGGAGGACAGATATTGCCCATACGTC
AGAGGGGGACAACTGGAATGGACAGCAGTTGAACAAAGTCCGAGACCACTACTCCCGGTTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACCCGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAGGCGTGGGTCAATCATCGCATCTCTAAAGCTATTGTCTCTAGGGCAAAGGCTACCAACAGCGCTATCGCCCTGGAAGA
CCTGACAGGGATCCGGGAAAGAGTCAATCAACAACCCCGCAGCAAAACCGAAAGGCGCAGGGCCAACAGTTGGGCGTTCT
ACCAGCTACGCCAGTTTCTGGAATACAAGGCGAGAGTTGCAGGGGTTTCTCTGGTTCTTGTGCCGCCTGCCTACACGTCG
CAGACCTGTCACAAATGTTTACACATCCATCCCGATCCTGCGCAATCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGTCGTAAACCAGCCTAGAG
GTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAACAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
AGACCATCAACGCCACTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACGCGTGGTCTTTGTTTTTTACCATCAGCGCCTCCGACCGGCTCCTGGGGGAAGACCCGG
CTGTTGGCCGCTACATTACG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKAATLVQRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARVAGVSLVLVPPAYTS
QTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA

Sequences:

>Translated_397_residues
MSQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKAATLVQRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARVAGVSLVLVPPAYTS
QTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
>Mature_396_residues
SQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKAATLVQRKDGSYYIQICVE
KKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARVAGVSLVLVPPAYTSQ
TCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=233, Percent_Identity=27.8969957081545, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44885; Mature: 44754

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKAATLVQRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARVAGVSLVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKAATLVQRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARVAGVSLVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSGLFCSLVEQNRLRATESPLRTA
HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]