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The map label for this gene is yodJ [H]

Identifier: 86605383

GI number: 86605383

Start: 679854

End: 680588

Strand: Reverse

Name: yodJ [H]

Synonym: CYA_0671

Alternate gene names: 86605383

Gene position: 680588-679854 (Counterclockwise)

Preceding gene: 86605384

Following gene: 86605382

Centisome position: 23.21

GC content: 61.36

Gene sequence:

>735_bases
ATGAACGACGACATTCCGGTTGCGCGTCGCCAGCCATCTGGTGCGGAAAAAGCGCAAGGTTCCTCAGCTTCGTGGGGCCT
GTGGCTGGGCGTAGGGCTGGCCATAGTTGGCTTGCTGCTCTGGATGGCGTGGTGGCTGGAGAGATTGGCGGGATCCCCAG
CAGATTCCCCAGTCCTCGAAAAAGCCGGTCAGCCCCCTCTGGCGCAGCCAACTGAGCAGAATGAGCGGGTCTTGCTGCTG
GGGCACTATGCCTATTCCGAGGCCCCCGCAGATAGCCTACGGGTGGTGGGCAGCTACCACGGTCGAGAGGTGCGCCTGCG
CCAGGCGGCTGCCGAGAGCTACCTGCGCATGAGTGAAGCAGCCCAAGCCGACGGGATCCGCCTTGTCCCTATCTCTGGGT
TTCGCTCGATAGCGGAGCAGGAGTTTTTGTTTTTTCAACTGGCCCAATCGCGAGCCTTGCGACCGGAAGAACGGGCTGCG
CTCAGCGCTCCCCCCGGCTACAGCGAGCACCACACCGGCTACGCCATTGATATTGGCGATGCCCAGTTTCCTCAGTGGGA
CACTCAAGAAGCCTTTGAGACCACCCCTGCCTTCCGGTGGCTGGAGAGAAATGCCGCCCGTTTTGGCTTTGAGCTGTCTT
TCCCCAGAAACAATCCGCAGGGGGTGAACTACGAACCTTGGCACTGGCGCTTTGTGGGCGACCGCCACAGCCTGGAGACC
TTCTACAAGCGCTAA

Upstream 100 bases:

>100_bases
CTATCAGAACATCAACACCGAAACCCACGCCCGCGATATTTTGGCCGACTTGGGTTTGTAAAATCTCTTCGGTTCCTCTC
TGAGATCCCAGCCCTTGCGC

Downstream 100 bases:

>100_bases
CACCTCCCCTCTCCCCTTGGGAGAGGGGACGGGGGTGAGGGATCGAAAAGCGGATGACGCGATTCGAACGCGCGACCGTC
TCGTTGGCAACGAGAAGCTC

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MNDDIPVARRQPSGAEKAQGSSASWGLWLGVGLAIVGLLLWMAWWLERLAGSPADSPVLEKAGQPPLAQPTEQNERVLLL
GHYAYSEAPADSLRVVGSYHGREVRLRQAAAESYLRMSEAAQADGIRLVPISGFRSIAEQEFLFFQLAQSRALRPEERAA
LSAPPGYSEHHTGYAIDIGDAQFPQWDTQEAFETTPAFRWLERNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRHSLET
FYKR

Sequences:

>Translated_244_residues
MNDDIPVARRQPSGAEKAQGSSASWGLWLGVGLAIVGLLLWMAWWLERLAGSPADSPVLEKAGQPPLAQPTEQNERVLLL
GHYAYSEAPADSLRVVGSYHGREVRLRQAAAESYLRMSEAAQADGIRLVPISGFRSIAEQEFLFFQLAQSRALRPEERAA
LSAPPGYSEHHTGYAIDIGDAQFPQWDTQEAFETTPAFRWLERNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRHSLET
FYKR
>Mature_244_residues
MNDDIPVARRQPSGAEKAQGSSASWGLWLGVGLAIVGLLLWMAWWLERLAGSPADSPVLEKAGQPPLAQPTEQNERVLLL
GHYAYSEAPADSLRVVGSYHGREVRLRQAAAESYLRMSEAAQADGIRLVPISGFRSIAEQEFLFFQLAQSRALRPEERAA
LSAPPGYSEHHTGYAIDIGDAQFPQWDTQEAFETTPAFRWLERNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRHSLET
FYKR

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 27454; Mature: 27454

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDDIPVARRQPSGAEKAQGSSASWGLWLGVGLAIVGLLLWMAWWLERLAGSPADSPVLE
CCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
KAGQPPLAQPTEQNERVLLLGHYAYSEAPADSLRVVGSYHGREVRLRQAAAESYLRMSEA
HCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AQADGIRLVPISGFRSIAEQEFLFFQLAQSRALRPEERAALSAPPGYSEHHTGYAIDIGD
HHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEECCC
AQFPQWDTQEAFETTPAFRWLERNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRHSLET
CCCCCCCCHHHHHHCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHH
FYKR
HHCC
>Mature Secondary Structure
MNDDIPVARRQPSGAEKAQGSSASWGLWLGVGLAIVGLLLWMAWWLERLAGSPADSPVLE
CCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
KAGQPPLAQPTEQNERVLLLGHYAYSEAPADSLRVVGSYHGREVRLRQAAAESYLRMSEA
HCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AQADGIRLVPISGFRSIAEQEFLFFQLAQSRALRPEERAALSAPPGYSEHHTGYAIDIGD
HHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEECCC
AQFPQWDTQEAFETTPAFRWLERNAARFGFELSFPRNNPQGVNYEPWHWRFVGDRHSLET
CCCCCCCCHHHHHHCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHH
FYKR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]