Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86605378

Identifier: 86605378

GI number: 86605378

Start: 675283

End: 676173

Strand: Reverse

Name: 86605378

Synonym: CYA_0665

Alternate gene names: NA

Gene position: 676173-675283 (Counterclockwise)

Preceding gene: 86605379

Following gene: 86605377

Centisome position: 23.06

GC content: 60.61

Gene sequence:

>891_bases
ATGTCCAGATCCCCCGCCTTGCCGCCTGCCGAGCCGGGTTCAGCCGGATTTTCAGCGCTGAAGGCCCGCTATCTGCTGCT
GGCTTTCCTGTCGATCAACGGGGGGGTGGGTCTGGGGGTTGTCGCTTTGGCCAGGCTGTTGCCTCTGCCCTCGGACGATC
CGGTGCTGGCCTACGTTGTCTATTGCGTCACGTTTGTGCTCACTTGTATCTGGAGCTGGCAGCGCGGGCGACGAGCCCAT
TTGCAGATGAGGCGGCTGTGGGGCAACTGGCGAGCTGTGATTCCCTGGGGATCCCTGCTGCGGGTAGTGCCGGCTTTGGT
TGTGCTCTCCATGGGCACCACTTTGCTGATGCTCTACTGGGTGTCGCTGTCTTTCCCGGAGCTGGCGGAGTCGATGCTGG
ACTCCCTGGGGGAAGAGGAGGGGGAGACAGCCTGGCCGCAGGTGTACCAGGGGTTGCGCTGGCTCTCGATTGCAGTGGTG
GCCCCCATAACGGAGGAATGGCTGTTTCGCGGCATTTTGCTCCACCGCTGGAGCCTCAAGTGGGGGCTTGACAGAGGCCT
GCTGGCTTCTTCCGTGGTCTTTGGCCTACTGCACCCTAACCCACTTGGGCTGACGGTGTTTGGCCTGGTGATGGGGCTGC
TCTACCTGAAAGCACGCTCCTTGAGCTTACCCATCCTGGCCCATGCTTTGAACAATATCCTGGCTCTAGCGCTGGGATCC
CTGGGAGGAGGGGTAGTGGAACAGGTGGATCCCATCGGGAGCTTTCACCTCTACTACAGCCTGTGCTGTCTAGTTTTGGC
TGGGTTCATCGTAATCCCTTTCCTCCGCTGCCATTGGCCGGAACGGGGGGCTCACTTGCCCTATTTTGTAAATTGCCCGC
ACTCATGCTGA

Upstream 100 bases:

>100_bases
CCCTTCCACGAGGTAGCTTGCCCGGAGGATTGGCTTTCCAAAGTCGGTGCTCTCTCCCCCACCCTTATAAGATGGGAAAA
CTCCTACCTCTTACTTTTTT

Downstream 100 bases:

>100_bases
CACATAGAGTGCAGGCTTTGGGTAGCCCTGCAGTTGGCAAGCCAACCAAGGGCCCCCCACACCCCCCGTGTACGGGGGGC
AGGCCGGCTTACAGCAGCCC

Product: CAAX amino terminal protease family protein

Products: NA

Alternate protein names: CAAX Amino Terminal Protease Family Protein; AbrB Family Transcriptional Regulator; CAAX Amino Terminal Protease Family; Caax Amino Terminal Protease Family Protein; CAAX Amino Protease

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSRSPALPPAEPGSAGFSALKARYLLLAFLSINGGVGLGVVALARLLPLPSDDPVLAYVVYCVTFVLTCIWSWQRGRRAH
LQMRRLWGNWRAVIPWGSLLRVVPALVVLSMGTTLLMLYWVSLSFPELAESMLDSLGEEEGETAWPQVYQGLRWLSIAVV
APITEEWLFRGILLHRWSLKWGLDRGLLASSVVFGLLHPNPLGLTVFGLVMGLLYLKARSLSLPILAHALNNILALALGS
LGGGVVEQVDPIGSFHLYYSLCCLVLAGFIVIPFLRCHWPERGAHLPYFVNCPHSC

Sequences:

>Translated_296_residues
MSRSPALPPAEPGSAGFSALKARYLLLAFLSINGGVGLGVVALARLLPLPSDDPVLAYVVYCVTFVLTCIWSWQRGRRAH
LQMRRLWGNWRAVIPWGSLLRVVPALVVLSMGTTLLMLYWVSLSFPELAESMLDSLGEEEGETAWPQVYQGLRWLSIAVV
APITEEWLFRGILLHRWSLKWGLDRGLLASSVVFGLLHPNPLGLTVFGLVMGLLYLKARSLSLPILAHALNNILALALGS
LGGGVVEQVDPIGSFHLYYSLCCLVLAGFIVIPFLRCHWPERGAHLPYFVNCPHSC
>Mature_295_residues
SRSPALPPAEPGSAGFSALKARYLLLAFLSINGGVGLGVVALARLLPLPSDDPVLAYVVYCVTFVLTCIWSWQRGRRAHL
QMRRLWGNWRAVIPWGSLLRVVPALVVLSMGTTLLMLYWVSLSFPELAESMLDSLGEEEGETAWPQVYQGLRWLSIAVVA
PITEEWLFRGILLHRWSLKWGLDRGLLASSVVFGLLHPNPLGLTVFGLVMGLLYLKARSLSLPILAHALNNILALALGSL
GGGVVEQVDPIGSFHLYYSLCCLVLAGFIVIPFLRCHWPERGAHLPYFVNCPHSC

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32578; Mature: 32447

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSPALPPAEPGSAGFSALKARYLLLAFLSINGGVGLGVVALARLLPLPSDDPVLAYVV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
YCVTFVLTCIWSWQRGRRAHLQMRRLWGNWRAVIPWGSLLRVVPALVVLSMGTTLLMLYW
HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VSLSFPELAESMLDSLGEEEGETAWPQVYQGLRWLSIAVVAPITEEWLFRGILLHRWSLK
HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGLDRGLLASSVVFGLLHPNPLGLTVFGLVMGLLYLKARSLSLPILAHALNNILALALGS
HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LGGGVVEQVDPIGSFHLYYSLCCLVLAGFIVIPFLRCHWPERGAHLPYFVNCPHSC
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure 
SRSPALPPAEPGSAGFSALKARYLLLAFLSINGGVGLGVVALARLLPLPSDDPVLAYVV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
YCVTFVLTCIWSWQRGRRAHLQMRRLWGNWRAVIPWGSLLRVVPALVVLSMGTTLLMLYW
HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VSLSFPELAESMLDSLGEEEGETAWPQVYQGLRWLSIAVVAPITEEWLFRGILLHRWSLK
HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGLDRGLLASSVVFGLLHPNPLGLTVFGLVMGLLYLKARSLSLPILAHALNNILALALGS
HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LGGGVVEQVDPIGSFHLYYSLCCLVLAGFIVIPFLRCHWPERGAHLPYFVNCPHSC
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA