Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86605148

Identifier: 86605148

GI number: 86605148

Start: 447850

End: 448440

Strand: Reverse

Name: 86605148

Synonym: CYA_0429

Alternate gene names: NA

Gene position: 448440-447850 (Counterclockwise)

Preceding gene: 86605153

Following gene: 86605146

Centisome position: 15.29

GC content: 60.41

Gene sequence:

>591_bases
ATGCCTGCTGACCCAGCGTCTTCCCCCTCCCAGACTTGGCATGTGCTGGTGATCGATGACGAGCAGGGACGGCGGGCTGT
GGCCCTCAGTGCCGCCACCTATTCCATCGGCAGGGATCCCAGCAACGCCATTGTCGTCCATTCGGCGGCGGTTTCTCGGC
AGCACGCGCTGCTCTTGCGGCTGCCGCAAAAGGGCGGTGGCTACACCTACCGGCTGTTGGACGGCAATATCGAAGGCAAG
CGCAGCACCAATGGCATCTCAGTAAACGGGCAGAAATGTCTGAGCTGGGATCTCAAGGATGGGGATCAGATCCAGTTGGG
GGATCAGGTGCGGATGCAGTATTGCATTCGCCAGTTGTCGAACGAAGAGTTTCAGCGGTATCTCCAGTCTGTCAGCTTTC
GCAGCCTAAAGGCGGAGGTGGTGGATCGGCGCTCCACAACGATGCAGCGGTTTGACCCGCCCTCGATGCGGGTGATTTTG
CCCCAACAGGAGAGGGCGGAGAAGGTTGAAGACGTGGGATCCCGCCGTCGCAACCCGCTGTGGCTGCTGTTCCAGACGCT
CTGGGGACGTTTGGGGAGAAAGTCGAGGTGA

Upstream 100 bases:

>100_bases
CTGTTTACGATTCCTCGCGGGTGGCTAAGCCCTATCCTATCATTATGAAGGAAGGCCCTTCTTCTGCCGAACCTTTCTCT
GGCAAAGCCAACCCCAAACG

Downstream 100 bases:

>100_bases
TTCAACTCTCAGGAATGCCCACCTGCTCTGAGTCTGAGCGAGCTGATGGGGTTTCGACGCGGTCTTGCTCTGATGCTTCT
GCCTGCAGATCCAGGAGAGA

Product: FHA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MPADPASSPSQTWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVVHSAAVSRQHALLLRLPQKGGGYTYRLLDGNIEGK
RSTNGISVNGQKCLSWDLKDGDQIQLGDQVRMQYCIRQLSNEEFQRYLQSVSFRSLKAEVVDRRSTTMQRFDPPSMRVIL
PQQERAEKVEDVGSRRRNPLWLLFQTLWGRLGRKSR

Sequences:

>Translated_196_residues
MPADPASSPSQTWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVVHSAAVSRQHALLLRLPQKGGGYTYRLLDGNIEGK
RSTNGISVNGQKCLSWDLKDGDQIQLGDQVRMQYCIRQLSNEEFQRYLQSVSFRSLKAEVVDRRSTTMQRFDPPSMRVIL
PQQERAEKVEDVGSRRRNPLWLLFQTLWGRLGRKSR
>Mature_195_residues
PADPASSPSQTWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVVHSAAVSRQHALLLRLPQKGGGYTYRLLDGNIEGKR
STNGISVNGQKCLSWDLKDGDQIQLGDQVRMQYCIRQLSNEEFQRYLQSVSFRSLKAEVVDRRSTTMQRFDPPSMRVILP
QQERAEKVEDVGSRRRNPLWLLFQTLWGRLGRKSR

Specific function: Unknown

COG id: COG1716

COG function: function code T; FOG: FHA domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 22237; Mature: 22105

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50006 FHA_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPADPASSPSQTWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVVHSAAVSRQHALLLR
CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEHHHCCCCEEEEE
LPQKGGGYTYRLLDGNIEGKRSTNGISVNGQKCLSWDLKDGDQIQLGDQVRMQYCIRQLS
ECCCCCCEEEEEECCCCCCCCCCCCEEECCCEEEEECCCCCCEEEECHHHHHHHHHHHHC
NEEFQRYLQSVSFRSLKAEVVDRRSTTMQRFDPPSMRVILPQQERAEKVEDVGSRRRNPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCE
WLLFQTLWGRLGRKSR
EEHHHHHHHHCCCCCC
>Mature Secondary Structure 
PADPASSPSQTWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVVHSAAVSRQHALLLR
CCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEHHHCCCCEEEEE
LPQKGGGYTYRLLDGNIEGKRSTNGISVNGQKCLSWDLKDGDQIQLGDQVRMQYCIRQLS
ECCCCCCEEEEEECCCCCCCCCCCCEEECCCEEEEECCCCCCEEEECHHHHHHHHHHHHC
NEEFQRYLQSVSFRSLKAEVVDRRSTTMQRFDPPSMRVILPQQERAEKVEDVGSRRRNPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCE
WLLFQTLWGRLGRKSR
EEHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]