Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86605072

Identifier: 86605072

GI number: 86605072

Start: 370637

End: 371056

Strand: Reverse

Name: 86605072

Synonym: CYA_0353

Alternate gene names: NA

Gene position: 371056-370637 (Counterclockwise)

Preceding gene: 86605074

Following gene: 86605067

Centisome position: 12.65

GC content: 64.29

Gene sequence:

>420_bases
GTGATCAAGCTGGGATCCAAACCTTGGGGGTTGACGCTGGCCCTGCTGGGCGTGGCTCTGGTCGGTTGTGGTGCCGCCGC
GCTCACTGCCAGCCCCCCTCTGCCGCCGCTAATCACCAGCAGCGACATTCCTGCCGCCGTTAGCCGGGGCGGCTTTTTGG
AGGTTGGGGTCTCGGTGTCGGTGCCGGGGCGGCTCCCAGCGGAGCTGGCGTTTCAGGTGTCATGGTCGGGGATCGAGGTG
CAGACGCTGTCAGCAGCCCAGGTCAACTGTGTCTCCGGCAACGTGTCCTGCACTACTCGCTTCCGCATCCGCCCCCCTTT
GAACTTGGTGCCCGGCTCTTACCTGCTCAGTTTACGGGTTTTCGACCGGTTGGGACAAAGTGCCGCTGTGACTGCGACGG
TGCTGTTGAGGGATCCCTGA

Upstream 100 bases:

>100_bases
CCACCTATAGCGTGAATTTTTGAGTTCTCCCAAAACTAACGCTAGAGATGTTGCCTCCATCCTCTATACTTGGGGGATGG
AGTTCTGAAGCGGGAGCCCT

Downstream 100 bases:

>100_bases
AGGCTGCACCGGAGAGTTGCCTTTCAGTTGTTGGCTGGGCGCTTCCGCATGAACGAAAAATCCTTATTTCACCGCCTGGG
CAAGCGCCCGGATCCCTGCT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MIKLGSKPWGLTLALLGVALVGCGAAALTASPPLPPLITSSDIPAAVSRGGFLEVGVSVSVPGRLPAELAFQVSWSGIEV
QTLSAAQVNCVSGNVSCTTRFRIRPPLNLVPGSYLLSLRVFDRLGQSAAVTATVLLRDP

Sequences:

>Translated_139_residues
MIKLGSKPWGLTLALLGVALVGCGAAALTASPPLPPLITSSDIPAAVSRGGFLEVGVSVSVPGRLPAELAFQVSWSGIEV
QTLSAAQVNCVSGNVSCTTRFRIRPPLNLVPGSYLLSLRVFDRLGQSAAVTATVLLRDP
>Mature_139_residues
MIKLGSKPWGLTLALLGVALVGCGAAALTASPPLPPLITSSDIPAAVSRGGFLEVGVSVSVPGRLPAELAFQVSWSGIEV
QTLSAAQVNCVSGNVSCTTRFRIRPPLNLVPGSYLLSLRVFDRLGQSAAVTATVLLRDP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14293; Mature: 14293

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLGSKPWGLTLALLGVALVGCGAAALTASPPLPPLITSSDIPAAVSRGGFLEVGVSVS
CCEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCEECCCCCHHHCCCCEEEEEEEEE
VPGRLPAELAFQVSWSGIEVQTLSAAQVNCVSGNVSCTTRFRIRPPLNLVPGSYLLSLRV
CCCCCCCEEEEEEECCCEEEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCHHHHHHHH
FDRLGQSAAVTATVLLRDP
HHHCCCCCEEEEEEEEECC
>Mature Secondary Structure
MIKLGSKPWGLTLALLGVALVGCGAAALTASPPLPPLITSSDIPAAVSRGGFLEVGVSVS
CCEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCEECCCCCHHHCCCCEEEEEEEEE
VPGRLPAELAFQVSWSGIEVQTLSAAQVNCVSGNVSCTTRFRIRPPLNLVPGSYLLSLRV
CCCCCCCEEEEEEECCCEEEEEECCEEEEEECCCEEEEEEEEECCCCCCCCCHHHHHHHH
FDRLGQSAAVTATVLLRDP
HHHCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA