Click here to switch to the map view.

The map label for this gene is 86605046

Identifier: 86605046

GI number: 86605046

Start: 343377

End: 343979

Strand: Reverse

Name: 86605046

Synonym: CYA_0324

Alternate gene names: NA

Gene position: 343979-343377 (Counterclockwise)

Preceding gene: 86605048

Following gene: 86605043

Centisome position: 11.73

GC content: 61.69

Gene sequence:

>603_bases
ATGCTGATCGATGCTCCCCAACAGCGGCTATTTCTCGCCCTCCTTCCCCCACCAGACCTGCAGGAGCAAGTGACCGCCAT
TAAACAACAGTTTGCCGAGCAATTCGCCAGCCGCGCAGCCCTGCGCTCGCCCCCTCACATCACCCTGGTGCCTCCTTTCG
AGTGGCCCACTGCCCAGCTGGCGGCCCTGACAGGATCCCTAGAAGCATTTGCTAAGGAGCAGGCGCCAGTTGCCGTTGAG
CTCTGTGGCTTCGGCGCCTTCCCGCCACGGGTTATTTATATTCACGTCGAGCCCTCCCCCGAGCTGCAACAGCTTCAGGC
CAAGGCCCAGCGGCACATGAGCCTCCTTCTCAAGCAAGAAGAAGCAACGGCTCCAGCCCGTCCCTTTGTGCCCCACATGA
CTGTGGCCTTCCGGGATCTCCAGCCGGCCCAGTTCCGCGCCGCCTGGCCGCAGTTCAAGGCTCGCCTCTTCCAGGGATCC
TTTCTCGCCTCTGCCCTGACCCTCCTCCTCCATGACGGCAAGCGCTGGCAGGTTTTTGCCGAATTCTCCCTCTCCGCCTC
TGAGGGATTGAGGCAGGAAACAACAGCCTACTCAACCCAGTGA

Upstream 100 bases:

>100_bases
TCGGGCATCCCGACAAACCTTCTGACCCCTAGGAAATGGGGTAGAGGCCTGGGGATGTGCTGCCCTAGCCTGGATAAAAG
GATCCCTCACCTGTCCGGCA

Downstream 100 bases:

>100_bases
GCAGCCATATATTCAGCTAGATCCAGCACCCGCTGCGAGTAGCCCCACTCGTTGTCGTACCAGGCCATCACCTTCACCAG
ATCCCCGTCCAGCACGCTGG

Product: 2',5' RNA ligase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLIDAPQQRLFLALLPPPDLQEQVTAIKQQFAEQFASRAALRSPPHITLVPPFEWPTAQLAALTGSLEAFAKEQAPVAVE
LCGFGAFPPRVIYIHVEPSPELQQLQAKAQRHMSLLLKQEEATAPARPFVPHMTVAFRDLQPAQFRAAWPQFKARLFQGS
FLASALTLLLHDGKRWQVFAEFSLSASEGLRQETTAYSTQ

Sequences:

>Translated_200_residues
MLIDAPQQRLFLALLPPPDLQEQVTAIKQQFAEQFASRAALRSPPHITLVPPFEWPTAQLAALTGSLEAFAKEQAPVAVE
LCGFGAFPPRVIYIHVEPSPELQQLQAKAQRHMSLLLKQEEATAPARPFVPHMTVAFRDLQPAQFRAAWPQFKARLFQGS
FLASALTLLLHDGKRWQVFAEFSLSASEGLRQETTAYSTQ
>Mature_200_residues
MLIDAPQQRLFLALLPPPDLQEQVTAIKQQFAEQFASRAALRSPPHITLVPPFEWPTAQLAALTGSLEAFAKEQAPVAVE
LCGFGAFPPRVIYIHVEPSPELQQLQAKAQRHMSLLLKQEEATAPARPFVPHMTVAFRDLQPAQFRAAWPQFKARLFQGS
FLASALTLLLHDGKRWQVFAEFSLSASEGLRQETTAYSTQ

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 22299; Mature: 22299

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDAPQQRLFLALLPPPDLQEQVTAIKQQFAEQFASRAALRSPPHITLVPPFEWPTAQL
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH
AALTGSLEAFAKEQAPVAVELCGFGAFPPRVIYIHVEPSPELQQLQAKAQRHMSLLLKQE
HHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
EATAPARPFVPHMTVAFRDLQPAQFRAAWPQFKARLFQGSFLASALTLLLHDGKRWQVFA
HCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEE
EFSLSASEGLRQETTAYSTQ
EECCCHHHCCHHHHHHCCCC
>Mature Secondary Structure
MLIDAPQQRLFLALLPPPDLQEQVTAIKQQFAEQFASRAALRSPPHITLVPPFEWPTAQL
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH
AALTGSLEAFAKEQAPVAVELCGFGAFPPRVIYIHVEPSPELQQLQAKAQRHMSLLLKQE
HHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
EATAPARPFVPHMTVAFRDLQPAQFRAAWPQFKARLFQGSFLASALTLLLHDGKRWQVFA
HCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEE
EFSLSASEGLRQETTAYSTQ
EECCCHHHCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA