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The map label for this gene is repCf1

Identifier: 86361301

GI number: 86361301

Start: 641237

End: 642517

Strand: Direct

Name: repCf1

Synonym: RHE_PF00573

Alternate gene names: NA

Gene position: 641237-642517 (Clockwise)

Preceding gene: 86361300

Following gene: NA

Centisome position: 99.8

GC content: 64.48

Gene sequence:

>1281_bases
ATGGAGAGTGAATCTGTGACGACGCCCTTCGGGCGGCGGCCGATGTCGCTTGCCCTGCTGCTGAAACAGCGGCGCGGCGA
AGCGATTGCGGCCGGGACGACGCGCAACAAATGGAAATTGTTCCGATCGGTCTGCGAGGCGCGGGCAGGGCTCGGCGTGA
CCGACCGGGCGCTCACCGTGCTCGATGCGCTGCTGAGCTTCTATCCTGAGGACGAACTCTCCAGCGAAAAAGGGCTGGTG
GTCTTTCCCTCGAATGCGCAGCTTTCGCTGCGAGCACGCGGCATGGCCGCCGCGACGCTCCGCCGGCATCTGGCCGTGCT
CGTCGACGCCGGCCTGATCTCCCGCAAGGACAGCCCGAACGGCAAGCGTTATGTCCGCCGCGGCAGGGCAGGCGTCATTG
ACGAGGCCTATGGCTTCAGTCTCGCCCCGCTTCTGGCCCGCGCCTCGGAGATCGAGGCAATGGCCGCCGGGCTCGCCGCT
GACCGACAGATGCTGCGGGCGATGAAGGAGCGGCTGACGATCTGCCGGCGCGACATCGCCAAGCTCATCGCCGCCGCCGT
CGAGGAAGCCATTCCCGGCGAGTGGGAGCGAATTTCTTCGCTGTTTCACGCGCTGCTGGAACGCATCCCGAAGGCGGCAA
CACCCGAAAATCTGCGGCCGCTTCTAAAGGAGCTGGAAATGCTCCGCCTCGCCATCATCAACACATTGGAATCGCGAGAG
AAAATTCAAAATGCGAGCACCAATGAATCCCAGTTTGAGCGCCACATACAGAGTTCGAATCCCGAGTCCCTATCTGAATC
TGAACCGGGCCTGGAAACGGCGCAGGAGGCGAGGCTGGACGATCAACCGAGGTCAGGGCTGAAAGACGATGATCAAGGCA
GGCGAGGGGATGGCGGGCAGGGATTGCGGGCTGTTCGGACGGATGCAGGGAGATTGAAATCCTTCCAGCTCGGCACGGTC
CTGAAGGCTTGCCCCGATATCGCCGATTATGGCCCGGGCGGAGCGATCGGCAGCTGGCGGGATCTCATGACGGCGGCGGT
CACCGTGCGCACGATGCTGCGTGTCGGCCCGCCGGCCTACGAGGAAGCCTGTGCGGTGATGGGGCCGGAAAATGCCGCCA
CCGTCATGGCCTGCATCCTGCAAAGGGGAGGGTGCATCACCTCCGCCGGCGGCTATCTCAGGGATCTCACGCGTCGCGCC
GAACGCGGCGAATTCGCGCCCGGCCCGATGCTGACGGCGCTGTTGCGGGCGAAGGATCCGCCAATCGCCGAAGTTAGCTG
A

Upstream 100 bases:

>100_bases
CCCTCGCGTCTTTTCAGACGTGGCAATGACGCTGCAGCGCTTTTCCTCCTCGCATCGTTTCGGTGACCGAATTTCTTTTG
CCTGAATAGAGGTGAAGGAA

Downstream 100 bases:

>100_bases
CGGTGCTCTTTCTGCCGCGCAGAAGAGCGGCGCGGATCTGTTCGTTCTTGCTGAGCACGGGCGTGGGAACCAGTGCCGGC
TCGGGCGCCTCGACCTTGGC

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MESESVTTPFGRRPMSLALLLKQRRGEAIAAGTTRNKWKLFRSVCEARAGLGVTDRALTVLDALLSFYPEDELSSEKGLV
VFPSNAQLSLRARGMAAATLRRHLAVLVDAGLISRKDSPNGKRYVRRGRAGVIDEAYGFSLAPLLARASEIEAMAAGLAA
DRQMLRAMKERLTICRRDIAKLIAAAVEEAIPGEWERISSLFHALLERIPKAATPENLRPLLKELEMLRLAIINTLESRE
KIQNASTNESQFERHIQSSNPESLSESEPGLETAQEARLDDQPRSGLKDDDQGRRGDGGQGLRAVRTDAGRLKSFQLGTV
LKACPDIADYGPGGAIGSWRDLMTAAVTVRTMLRVGPPAYEEACAVMGPENAATVMACILQRGGCITSAGGYLRDLTRRA
ERGEFAPGPMLTALLRAKDPPIAEVS

Sequences:

>Translated_426_residues
MESESVTTPFGRRPMSLALLLKQRRGEAIAAGTTRNKWKLFRSVCEARAGLGVTDRALTVLDALLSFYPEDELSSEKGLV
VFPSNAQLSLRARGMAAATLRRHLAVLVDAGLISRKDSPNGKRYVRRGRAGVIDEAYGFSLAPLLARASEIEAMAAGLAA
DRQMLRAMKERLTICRRDIAKLIAAAVEEAIPGEWERISSLFHALLERIPKAATPENLRPLLKELEMLRLAIINTLESRE
KIQNASTNESQFERHIQSSNPESLSESEPGLETAQEARLDDQPRSGLKDDDQGRRGDGGQGLRAVRTDAGRLKSFQLGTV
LKACPDIADYGPGGAIGSWRDLMTAAVTVRTMLRVGPPAYEEACAVMGPENAATVMACILQRGGCITSAGGYLRDLTRRA
ERGEFAPGPMLTALLRAKDPPIAEVS
>Mature_426_residues
MESESVTTPFGRRPMSLALLLKQRRGEAIAAGTTRNKWKLFRSVCEARAGLGVTDRALTVLDALLSFYPEDELSSEKGLV
VFPSNAQLSLRARGMAAATLRRHLAVLVDAGLISRKDSPNGKRYVRRGRAGVIDEAYGFSLAPLLARASEIEAMAAGLAA
DRQMLRAMKERLTICRRDIAKLIAAAVEEAIPGEWERISSLFHALLERIPKAATPENLRPLLKELEMLRLAIINTLESRE
KIQNASTNESQFERHIQSSNPESLSESEPGLETAQEARLDDQPRSGLKDDDQGRRGDGGQGLRAVRTDAGRLKSFQLGTV
LKACPDIADYGPGGAIGSWRDLMTAAVTVRTMLRVGPPAYEEACAVMGPENAATVMACILQRGGCITSAGGYLRDLTRRA
ERGEFAPGPMLTALLRAKDPPIAEVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.rhizogenes possible replication protein C (repC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 46244; Mature: 46244

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESESVTTPFGRRPMSLALLLKQRRGEAIAAGTTRNKWKLFRSVCEARAGLGVTDRALTV
CCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
LDALLSFYPEDELSSEKGLVVFPSNAQLSLRARGMAAATLRRHLAVLVDAGLISRKDSPN
HHHHHHHCCCHHCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GKRYVRRGRAGVIDEAYGFSLAPLLARASEIEAMAAGLAADRQMLRAMKERLTICRRDIA
HHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIAAAVEEAIPGEWERISSLFHALLERIPKAATPENLRPLLKELEMLRLAIINTLESRE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KIQNASTNESQFERHIQSSNPESLSESEPGLETAQEARLDDQPRSGLKDDDQGRRGDGGQ
HHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
GLRAVRTDAGRLKSFQLGTVLKACPDIADYGPGGAIGSWRDLMTAAVTVRTMLRVGPPAY
CHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH
EEACAVMGPENAATVMACILQRGGCITSAGGYLRDLTRRAERGEFAPGPMLTALLRAKDP
HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
PIAEVS
CCCCCC
>Mature Secondary Structure
MESESVTTPFGRRPMSLALLLKQRRGEAIAAGTTRNKWKLFRSVCEARAGLGVTDRALTV
CCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
LDALLSFYPEDELSSEKGLVVFPSNAQLSLRARGMAAATLRRHLAVLVDAGLISRKDSPN
HHHHHHHCCCHHCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GKRYVRRGRAGVIDEAYGFSLAPLLARASEIEAMAAGLAADRQMLRAMKERLTICRRDIA
HHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIAAAVEEAIPGEWERISSLFHALLERIPKAATPENLRPLLKELEMLRLAIINTLESRE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KIQNASTNESQFERHIQSSNPESLSESEPGLETAQEARLDDQPRSGLKDDDQGRRGDGGQ
HHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
GLRAVRTDAGRLKSFQLGTVLKACPDIADYGPGGAIGSWRDLMTAAVTVRTMLRVGPPAY
CHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH
EEACAVMGPENAATVMACILQRGGCITSAGGYLRDLTRRAERGEFAPGPMLTALLRAKDP
HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
PIAEVS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]