BacMap

Definition	Rhizobium etli CFN 42 plasmid p42f, complete sequence.
Accession	NC_007766
Length	642,517

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The map label for this gene is gdhII [H]

Identifier: 86361269

GI number: 86361269

Start: 605968

End: 606693

Strand: Direct

Name: gdhII [H]

Synonym: RHE_PF00540

Alternate gene names: 86361269

Gene position: 605968-606693 (Clockwise)

Preceding gene: 86361265

Following gene: 86361270

Centisome position: 94.31

GC content: 58.82

Gene sequence:

>726_bases
ATGAGCATACACAAGACAATCGTCATCACAGGCGCTTCGCAGGGCATCGGTGCCGGCCTCGTGAAGACGTTTCTCGACAA
GGGCTGGAACGTCGTCGCGACATCCAGGCGCATCAGCCAGACGACGCTCTTTGATCGGACCGGGCGACTTGAGCTGATCG
ACGGGGACGTCAGCGACCCTGAAACAGCAGAGCGTGTCGCGCTGACGGCACTGGAGCAGTTCGGCTCGATCGATGTCCTC
GTCAACAATGCCGGCATCTTTTTGACCAAGCCGTTTCTCAACTACACCATCGAGGATCTTCGCCGCCTTTCGGCGACCAA
TGTAGAAGGCTTCCTGCATTTCACCAAACAGGCCGTGCGCCAGATGCTCCGCCAGAAGGCCGGCGGCAGCATCATCACCA
TCACCTCGTCCCTGACCGATCACCCGATCGCCGGCGTGAATGCATCGCTGGCGATGATCACCAAGGGCGGGCTCAACGCG
ATCACCAAGAGCCTGGCGCTGGAATTTGCCGGCGACAATATTCGCGTGAATGCCGTTTCTCCGGGCATTGTCGACACGCC
GATGCACGCGACGGATTCGAAAGACTTCTTGAAATCCCTCTCGCCGATGGGAACGATCACCGCGGTCCAGGAAATCGTCG
ACGGTGTGGTTTATCTCGCGGAATCGTCTAATATCACCGGGGAGGTGCTGCACGTCGACAACGGCGCACATCTCGGCAAA
TGGTGA

Upstream 100 bases:

>100_bases
TCCGGCCAAGCCCGCTCAGACAGATTTCCGACCCGTGAGACGCCCGGTTCATCCCACCTGGTGACGGGGCCTCGCGCGCA
AACAGAACGGAGCCACGGAA

Downstream 100 bases:

>100_bases
CGCCGAGCGCAGAAGCGCGGCTGCGGGAACTCGCGCTGGACCTGCCCCCTCCGCCGACGCCCTTCGGCGCCTACGTCGAA
GCGGTTCAAGCCGGCCCGCT

Product: oxidoreductase protein

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSIHKTIVITGASQGIGAGLVKTFLDKGWNVVATSRRISQTTLFDRTGRLELIDGDVSDPETAERVALTALEQFGSIDVL
VNNAGIFLTKPFLNYTIEDLRRLSATNVEGFLHFTKQAVRQMLRQKAGGSIITITSSLTDHPIAGVNASLAMITKGGLNA
ITKSLALEFAGDNIRVNAVSPGIVDTPMHATDSKDFLKSLSPMGTITAVQEIVDGVVYLAESSNITGEVLHVDNGAHLGK
W

Sequences:

>Translated_241_residues
MSIHKTIVITGASQGIGAGLVKTFLDKGWNVVATSRRISQTTLFDRTGRLELIDGDVSDPETAERVALTALEQFGSIDVL
VNNAGIFLTKPFLNYTIEDLRRLSATNVEGFLHFTKQAVRQMLRQKAGGSIITITSSLTDHPIAGVNASLAMITKGGLNA
ITKSLALEFAGDNIRVNAVSPGIVDTPMHATDSKDFLKSLSPMGTITAVQEIVDGVVYLAESSNITGEVLHVDNGAHLGK
W
>Mature_240_residues
SIHKTIVITGASQGIGAGLVKTFLDKGWNVVATSRRISQTTLFDRTGRLELIDGDVSDPETAERVALTALEQFGSIDVLV
NNAGIFLTKPFLNYTIEDLRRLSATNVEGFLHFTKQAVRQMLRQKAGGSIITITSSLTDHPIAGVNASLAMITKGGLNAI
TKSLALEFAGDNIRVNAVSPGIVDTPMHATDSKDFLKSLSPMGTITAVQEIVDGVVYLAESSNITGEVLHVDNGAHLGKW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705925, Length=239, Percent_Identity=31.7991631799163, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=31.3559322033898, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=27.2, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=30.8300395256917, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=27.4193548387097, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4504505, Length=211, Percent_Identity=27.9620853080569, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=28, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI59889578, Length=232, Percent_Identity=28.448275862069, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=33.8645418326693, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=33.1967213114754, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=31.6, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=32.6359832635983, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=29.5081967213115, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=28.6290322580645, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=27.6, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=30.3867403314917, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=27.3469387755102, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=24.6913580246914, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=27.2, Blast_Score=68, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.8804780876494, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=28.9156626506024, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=29.7297297297297, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=31.6872427983539, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=29.0076335877863, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.3893129770992, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=23.0188679245283, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=28.4584980237154, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=26.5151515151515, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17555706, Length=239, Percent_Identity=29.7071129707113, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=24.7104247104247, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=27.8625954198473, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=26.9076305220884, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=29.0566037735849, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=25.0965250965251, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=27.710843373494, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=26.615969581749, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=27.9693486590038, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=265, Percent_Identity=25.2830188679245, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=26.2745098039216, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=265, Percent_Identity=26.7924528301887, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=26.8939393939394, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=237, Percent_Identity=26.5822784810127, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=208, Percent_Identity=25.4807692307692, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=30.6451612903226, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=31.9066147859922, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=32.7800829875519, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI116007236, Length=200, Percent_Identity=30, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=30.4, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=29.3650793650794, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24641232, Length=228, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=29.5081967213115, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007238, Length=173, Percent_Identity=29.4797687861272, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24663911, Length=222, Percent_Identity=27.9279279279279, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648693, Length=236, Percent_Identity=28.3898305084746, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355889, Length=236, Percent_Identity=28.3898305084746, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007234, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571387, Length=204, Percent_Identity=28.921568627451, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641388, Length=199, Percent_Identity=29.1457286432161, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=27.0491803278689, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24648944, Length=207, Percent_Identity=29.951690821256, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644337, Length=202, Percent_Identity=29.7029702970297, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 25732; Mature: 25601

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIHKTIVITGASQGIGAGLVKTFLDKGWNVVATSRRISQTTLFDRTGRLELIDGDVSDP
CCCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCC
ETAERVALTALEQFGSIDVLVNNAGIFLTKPFLNYTIEDLRRLSATNVEGFLHFTKQAVR
HHHHHHHHHHHHHHCCEEEEEECCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
QMLRQKAGGSIITITSSLTDHPIAGVNASLAMITKGGLNAITKSLALEFAGDNIRVNAVS
HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHEECCCEEEEEEEC
PGIVDTPMHATDSKDFLKSLSPMGTITAVQEIVDGVVYLAESSNITGEVLHVDNGAHLGK
CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCC
W
C
>Mature Secondary Structure 
SIHKTIVITGASQGIGAGLVKTFLDKGWNVVATSRRISQTTLFDRTGRLELIDGDVSDP
CCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCC
ETAERVALTALEQFGSIDVLVNNAGIFLTKPFLNYTIEDLRRLSATNVEGFLHFTKQAVR
HHHHHHHHHHHHHHCCEEEEEECCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
QMLRQKAGGSIITITSSLTDHPIAGVNASLAMITKGGLNAITKSLALEFAGDNIRVNAVS
HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHEECCCEEEEEEEC
PGIVDTPMHATDSKDFLKSLSPMGTITAVQEIVDGVVYLAESSNITGEVLHVDNGAHLGK
CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCC
W
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA