Click here to switch to the map view.

The map label for this gene is ydfI [H]

Identifier: 86361209

GI number: 86361209

Start: 539948

End: 540670

Strand: Reverse

Name: ydfI [H]

Synonym: RHE_PF00479

Alternate gene names: 86361209

Gene position: 540670-539948 (Counterclockwise)

Preceding gene: 86361210

Following gene: 86361207

Centisome position: 84.15

GC content: 61.69

Gene sequence:

>723_bases
ATGAAAGTTTTGATCGTCGAGGACGACCCGCTGCACCGGTCCTATCTGCACGAGGCTGTCAACGCTGCCCTGCCGGAATG
CGACACGGTGATCGAGGCGGAGAACGGAACCGCCGGCGAGAAGCTCGCCCGCGACCACAAGTCGGCGCACATCGTCATGG
ACCTGCAGATGGCAAGTCGCAACGGCATCGAGGCGGCGCGGACGATCTGGAAGGAGCGGCCGGAGACCCGTATCCTGTTC
TGGTCGAATTATTCGGATGAGGCTTATGTGCGCGGGGTCTCGCGCATCGTGCCGGATGGGGCCGCCTATGGCTATGTGCT
GAAATCCGCTTCCGACGAGCGACTGAAGCTTGCGCTGCGCTCGATCTTCATCGAGAGCCAGTGCGTCATCGACCGCGAGG
TGCGTGGTCTGCAGCAGAAGAGCCTCGGCCAGACCAACGGCTTCACCGATTCCGAATACGAGATCCTCGTTGACATAGCC
CTCGGCCTGACCGACCGGGCCATCGCCAAACGCCGGAGCCTGTCGTTGCGCAGCGTGCAGAACCGCCTGCAGCAGCTCTA
CGACAAGCTCGACGTCTATCAGACGGCAGGCGACGACCACGAGGACGGCCGCTTCAATCTCCGCGCCCGCGCCGTCACGA
TTGCTTTCTTGCGTAAACTTCTGAATTACAGCGCTCTGGAACGCGCTGAGGCGGAGCTGCAGGAATGGCTTGATGGAAAG
TAA

Upstream 100 bases:

>100_bases
TTTACGATCGGCCCCGGCCATAATAGTCGCGGGACCGCGGTGCGCGTCATGCTGCCGCTTGGCGGCCCGGCGGGCGAGCC
AGACTGAGGAGAAAGGCACG

Downstream 100 bases:

>100_bases
TTTGCCGACCGCTGTCGGAACCTTCAGGTGATCCTTGGCATTGAGGCGAGTTGGTGCTTTTCTATCTCGAGCGGCTCGTC
ATGACCGGGTGTCCAAGCTC

Product: two-component response regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTAGEKLARDHKSAHIVMDLQMASRNGIEAARTIWKERPETRILF
WSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLALRSIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDIA
LGLTDRAIAKRRSLSLRSVQNRLQQLYDKLDVYQTAGDDHEDGRFNLRARAVTIAFLRKLLNYSALERAEAELQEWLDGK

Sequences:

>Translated_240_residues
MKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTAGEKLARDHKSAHIVMDLQMASRNGIEAARTIWKERPETRILF
WSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLALRSIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDIA
LGLTDRAIAKRRSLSLRSVQNRLQQLYDKLDVYQTAGDDHEDGRFNLRARAVTIAFLRKLLNYSALERAEAELQEWLDGK
>Mature_240_residues
MKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTAGEKLARDHKSAHIVMDLQMASRNGIEAARTIWKERPETRILF
WSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLALRSIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDIA
LGLTDRAIAKRRSLSLRSVQNRLQQLYDKLDVYQTAGDDHEDGRFNLRARAVTIAFLRKLLNYSALERAEAELQEWLDGK

Specific function: Member of the two-component regulatory system ydfH/ydfI. Regulates the transcription of ydfJ by binding to its promoter region [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27211; Mature: 27211

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTAGEKLARDHKSAHIVMDLQMASR
CEEEEECCCCCHHHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHCCCEEEEEEEEECCC
NGIEAARTIWKERPETRILFWSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLALR
CCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHH
SIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDIALGLTDRAIAKRRSLSLRSVQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHH
NRLQQLYDKLDVYQTAGDDHEDGRFNLRARAVTIAFLRKLLNYSALERAEAELQEWLDGK
HHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTAGEKLARDHKSAHIVMDLQMASR
CEEEEECCCCCHHHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHCCCEEEEEEEEECCC
NGIEAARTIWKERPETRILFWSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLALR
CCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHH
SIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDIALGLTDRAIAKRRSLSLRSVQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHH
NRLQQLYDKLDVYQTAGDDHEDGRFNLRARAVTIAFLRKLLNYSALERAEAELQEWLDGK
HHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]