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The map label for this gene is rbsR [H]

Identifier: 86360949

GI number: 86360949

Start: 231496

End: 232599

Strand: Direct

Name: rbsR [H]

Synonym: RHE_PF00218

Alternate gene names: 86360949

Gene position: 231496-232599 (Clockwise)

Preceding gene: 86360942

Following gene: 86360952

Centisome position: 36.03

GC content: 58.7

Gene sequence:

>1104_bases
ATGCGAAAGCCTAAGACCCAAAAGAATGCTGAAATTGATAAGCCCGCCCGCGTGACCATGATGGACATCGCCGCGGCGGC
CGGCTGCTCACAGGCTGCTGTTTCCTTCGTGCTCAACGACACGCCCGGCACCCGCATCTCACAGCAGACTCGCGACCGGG
TATTGGAGGCGGCGCGCGCCCTCGGCTACACGGGGACAAGCTATACCATGAAGGCCTCTTATTCGGGCCTGGACAACGTG
ATTGGCTTCGCCGTGGATCAGCTCGCTACCAGCCCGGAAGCGATCGTTGCGATCGAAGGCGCCCGCCAAGCGTCGTGGAA
TACGGGCAACGTGCTGTTGGTTACCCAAACGCTAGGCGATCCCGTCATGGAGCCAAAAGCAATCAGGGCCCTGACGAACG
GGGGCATATCCGCACTCATATACATGACAATCTATACCAGAGAGGTCCAACTCCCTTCTTATGTCTGTGGACTCAACATG
CCGACTGTATTGTTGAACTGCTACACGGCGGATCATGCCTTTCCAGCCGTGGTCCCAAGTGAAATCGCCGGAGGCCAGAG
CTCCACCCGGCATCTGATCACGCATGGCCACCATCGCATAGGGACGATCACTGGTGAAATCTGGATGCAGGCTGCACAAG
ACCGGCTGACGGGATACCGCCGTGCACTAGCGACTGCCGATATACCCTTCGATCCAGAATTAGTCGTTGAAGGCGACTGG
TCGGCCGGTGCCGGCTACGCCGCTACGATGCAATTGCTTGCGTTGCAGGACCCTCCGACCGCGATTTTCTGCCAGAACGA
TCGCACGGCAGTGGGATGCTACGAAGCGCTCAAAGATGCTGGCCTTCGCATTCCCCAGGACATGTCGGTGGTCGGTTACG
ACGACGAAGAAATTTCGAGACATCTGGTACCGGCACTGACCACTTCGGTCCTTCCGCACCTCGCCATGGGTCAGTGGGCG
ATTGAACATCTCAACCTGCAGACCATGCCCGGCAAGCGCTATCCAATTACGAAGCTCGAATGCTCGCTGGTCAATCGTCA
TTCCGTCGCTGCGCCGAGGGCCAAGGCGCGGCATATTTTCGATGGGGCGCATGGGCCGCGATAG

Upstream 100 bases:

>100_bases
CATTGTAGGCGTTCGCGCAATTGCCAGCACTTTCGGACGAATGCTAATATTAATTACCTAACACGCAACTTCTTCCAAGA
TCCGGAGATCATTCCCCCGA

Downstream 100 bases:

>100_bases
ACTGGAGGTCGAGCCGGCGGGGCACCGCACGGCTGGAGCATAATCCCCGTCTCGGTCGGCATCATTCTCTAGTTATTCAA
TAGAACAGGATTCACCCTTT

Product: ribose operon transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MRKPKTQKNAEIDKPARVTMMDIAAAAGCSQAAVSFVLNDTPGTRISQQTRDRVLEAARALGYTGTSYTMKASYSGLDNV
IGFAVDQLATSPEAIVAIEGARQASWNTGNVLLVTQTLGDPVMEPKAIRALTNGGISALIYMTIYTREVQLPSYVCGLNM
PTVLLNCYTADHAFPAVVPSEIAGGQSSTRHLITHGHHRIGTITGEIWMQAAQDRLTGYRRALATADIPFDPELVVEGDW
SAGAGYAATMQLLALQDPPTAIFCQNDRTAVGCYEALKDAGLRIPQDMSVVGYDDEEISRHLVPALTTSVLPHLAMGQWA
IEHLNLQTMPGKRYPITKLECSLVNRHSVAAPRAKARHIFDGAHGPR

Sequences:

>Translated_367_residues
MRKPKTQKNAEIDKPARVTMMDIAAAAGCSQAAVSFVLNDTPGTRISQQTRDRVLEAARALGYTGTSYTMKASYSGLDNV
IGFAVDQLATSPEAIVAIEGARQASWNTGNVLLVTQTLGDPVMEPKAIRALTNGGISALIYMTIYTREVQLPSYVCGLNM
PTVLLNCYTADHAFPAVVPSEIAGGQSSTRHLITHGHHRIGTITGEIWMQAAQDRLTGYRRALATADIPFDPELVVEGDW
SAGAGYAATMQLLALQDPPTAIFCQNDRTAVGCYEALKDAGLRIPQDMSVVGYDDEEISRHLVPALTTSVLPHLAMGQWA
IEHLNLQTMPGKRYPITKLECSLVNRHSVAAPRAKARHIFDGAHGPR
>Mature_367_residues
MRKPKTQKNAEIDKPARVTMMDIAAAAGCSQAAVSFVLNDTPGTRISQQTRDRVLEAARALGYTGTSYTMKASYSGLDNV
IGFAVDQLATSPEAIVAIEGARQASWNTGNVLLVTQTLGDPVMEPKAIRALTNGGISALIYMTIYTREVQLPSYVCGLNM
PTVLLNCYTADHAFPAVVPSEIAGGQSSTRHLITHGHHRIGTITGEIWMQAAQDRLTGYRRALATADIPFDPELVVEGDW
SAGAGYAATMQLLALQDPPTAIFCQNDRTAVGCYEALKDAGLRIPQDMSVVGYDDEEISRHLVPALTTSVLPHLAMGQWA
IEHLNLQTMPGKRYPITKLECSLVNRHSVAAPRAKARHIFDGAHGPR

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=340, Percent_Identity=29.4117647058824, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1790194, Length=308, Percent_Identity=30.1948051948052, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1790369, Length=342, Percent_Identity=28.6549707602339, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789202, Length=345, Percent_Identity=30.1449275362319, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1786540, Length=341, Percent_Identity=30.4985337243402, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788474, Length=337, Percent_Identity=30.2670623145401, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789068, Length=334, Percent_Identity=26.0479041916168, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787580, Length=328, Percent_Identity=27.7439024390244, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787906, Length=283, Percent_Identity=25.7950530035336, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789456, Length=144, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39623; Mature: 39623

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPKTQKNAEIDKPARVTMMDIAAAAGCSQAAVSFVLNDTPGTRISQQTRDRVLEAARA
CCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHEEEEEEECCCCCCCHHHHHHHHHHHHHH
LGYTGTSYTMKASYSGLDNVIGFAVDQLATSPEAIVAIEGARQASWNTGNVLLVTQTLGD
HCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCC
PVMEPKAIRALTNGGISALIYMTIYTREVQLPSYVCGLNMPTVLLNCYTADHAFPAVVPS
CCCCCHHHHHHHCCCCEEEEEEEEEEEEECCCCEEECCCCHHHEEEEECCCCCCCCCCCH
EIAGGQSSTRHLITHGHHRIGTITGEIWMQAAQDRLTGYRRALATADIPFDPELVVEGDW
HHCCCCCCCCHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
SAGAGYAATMQLLALQDPPTAIFCQNDRTAVGCYEALKDAGLRIPQDMSVVGYDDEEISR
CCCCCHHHHEEEEEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHH
HLVPALTTSVLPHLAMGQWAIEHLNLQTMPGKRYPITKLECSLVNRHSVAAPRAKARHIF
HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEHHHHCCCCCCCCCHHHHHHH
DGAHGPR
CCCCCCC
>Mature Secondary Structure
MRKPKTQKNAEIDKPARVTMMDIAAAAGCSQAAVSFVLNDTPGTRISQQTRDRVLEAARA
CCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHEEEEEEECCCCCCCHHHHHHHHHHHHHH
LGYTGTSYTMKASYSGLDNVIGFAVDQLATSPEAIVAIEGARQASWNTGNVLLVTQTLGD
HCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCC
PVMEPKAIRALTNGGISALIYMTIYTREVQLPSYVCGLNMPTVLLNCYTADHAFPAVVPS
CCCCCHHHHHHHCCCCEEEEEEEEEEEEECCCCEEECCCCHHHEEEEECCCCCCCCCCCH
EIAGGQSSTRHLITHGHHRIGTITGEIWMQAAQDRLTGYRRALATADIPFDPELVVEGDW
HHCCCCCCCCHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
SAGAGYAATMQLLALQDPPTAIFCQNDRTAVGCYEALKDAGLRIPQDMSVVGYDDEEISR
CCCCCHHHHEEEEEECCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHH
HLVPALTTSVLPHLAMGQWAIEHLNLQTMPGKRYPITKLECSLVNRHSVAAPRAKARHIF
HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCEEHHHHCCCCCCCCCHHHHHHH
DGAHGPR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]