Definition Rhizobium etli CFN 42 plasmid p42f, complete sequence.
Accession NC_007766
Length 642,517

Click here to switch to the map view.

The map label for this gene is 86360862

Identifier: 86360862

GI number: 86360862

Start: 138709

End: 139191

Strand: Direct

Name: 86360862

Synonym: RHE_PF00131

Alternate gene names: NA

Gene position: 138709-139191 (Clockwise)

Preceding gene: 86360861

Following gene: 86360863

Centisome position: 21.59

GC content: 60.04

Gene sequence:

>483_bases
ATGTCTGGCCTTTTTCATTCAAGAAGACCGAACAGCGCCCGCCGCTCGTACCGAGACTTGAAGCGCAGCGGCCCGCGCTA
TCCTGTTGGGCAAGGACATCGATTGAAACACCCAAGTGACAACAGCTTTTCAGAACGTCGTAAGTCCGCTGAAAGCGCCA
GACGTCAGCTAATTGCAAAATTTGAGTCGGCTCCAAAGCCGACAGACCCTGTAATGCAAGAACGCTTGGCGGCGCGCGAA
GCAGTTGCTTCGGCCAGGACCGCGCGTCGCGCCGAGCGCGATGCGATGAAGGCGGTGGAAAATGACCGCCTCCTTCGGGA
AGCTGCCGCATTAGCCGAGGTTGCCGAGGCTCATCACAGAGCAGAGGCGGAGGCTCGCCAATTGGAAGCCAATAACCGAA
TCGCACGTGTCGTCGCCGATGAAGCGGCACGCAAGGCCGAGCGCGACCGGCGCTATGCCGCGCGTAAGGCTCGTCGCGCT
TGA

Upstream 100 bases:

>100_bases
ATGTCTGCGGGCCAGCTCCAAGCGGCCTAAAAAGCTCCTGTAGCAGCTGCGACCACGGACGTACTGGCGTGGCTGGCAAG
GTCAGTTGAAGGCCAGGCAG

Downstream 100 bases:

>100_bases
CGGCCGGAACATCCGACCGTGGCTCCCGCAAATTTGCATCGTCGTCCAAAAGGAAATCAGAAAACCTATGAGAAGCCAAG
CCGGCCAGTTGCACGAGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAKFESAPKPTDPVMQERLAARE
AVASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHRAEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA

Sequences:

>Translated_160_residues
MSGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAKFESAPKPTDPVMQERLAARE
AVASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHRAEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA
>Mature_159_residues
SGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAKFESAPKPTDPVMQERLAAREA
VASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHRAEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18161; Mature: 18029

Theoretical pI: Translated: 11.85; Mature: 11.85

Prosite motif: PS00055 RIBOSOMAL_S12

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAK
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FESAPKPTDPVMQERLAAREAVASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHR
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAK
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FESAPKPTDPVMQERLAAREAVASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHR
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA