| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is 86360862
Identifier: 86360862
GI number: 86360862
Start: 138709
End: 139191
Strand: Direct
Name: 86360862
Synonym: RHE_PF00131
Alternate gene names: NA
Gene position: 138709-139191 (Clockwise)
Preceding gene: 86360861
Following gene: 86360863
Centisome position: 21.59
GC content: 60.04
Gene sequence:
>483_bases ATGTCTGGCCTTTTTCATTCAAGAAGACCGAACAGCGCCCGCCGCTCGTACCGAGACTTGAAGCGCAGCGGCCCGCGCTA TCCTGTTGGGCAAGGACATCGATTGAAACACCCAAGTGACAACAGCTTTTCAGAACGTCGTAAGTCCGCTGAAAGCGCCA GACGTCAGCTAATTGCAAAATTTGAGTCGGCTCCAAAGCCGACAGACCCTGTAATGCAAGAACGCTTGGCGGCGCGCGAA GCAGTTGCTTCGGCCAGGACCGCGCGTCGCGCCGAGCGCGATGCGATGAAGGCGGTGGAAAATGACCGCCTCCTTCGGGA AGCTGCCGCATTAGCCGAGGTTGCCGAGGCTCATCACAGAGCAGAGGCGGAGGCTCGCCAATTGGAAGCCAATAACCGAA TCGCACGTGTCGTCGCCGATGAAGCGGCACGCAAGGCCGAGCGCGACCGGCGCTATGCCGCGCGTAAGGCTCGTCGCGCT TGA
Upstream 100 bases:
>100_bases ATGTCTGCGGGCCAGCTCCAAGCGGCCTAAAAAGCTCCTGTAGCAGCTGCGACCACGGACGTACTGGCGTGGCTGGCAAG GTCAGTTGAAGGCCAGGCAG
Downstream 100 bases:
>100_bases CGGCCGGAACATCCGACCGTGGCTCCCGCAAATTTGCATCGTCGTCCAAAAGGAAATCAGAAAACCTATGAGAAGCCAAG CCGGCCAGTTGCACGAGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAKFESAPKPTDPVMQERLAARE AVASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHRAEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA
Sequences:
>Translated_160_residues MSGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAKFESAPKPTDPVMQERLAARE AVASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHRAEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA >Mature_159_residues SGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAKFESAPKPTDPVMQERLAAREA VASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHRAEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18161; Mature: 18029
Theoretical pI: Translated: 11.85; Mature: 11.85
Prosite motif: PS00055 RIBOSOMAL_S12
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAK CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH FESAPKPTDPVMQERLAAREAVASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHR HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SGLFHSRRPNSARRSYRDLKRSGPRYPVGQGHRLKHPSDNSFSERRKSAESARRQLIAK CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH FESAPKPTDPVMQERLAAREAVASARTARRAERDAMKAVENDRLLREAAALAEVAEAHHR HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEAEARQLEANNRIARVVADEAARKAERDRRYAARKARRA HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA