BacMap

Definition	Rhizobium etli CFN 42 plasmid p42f, complete sequence.
Accession	NC_007766
Length	642,517

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The map label for this gene is yxjF [H]

Identifier: 86360822

GI number: 86360822

Start: 90199

End: 90972

Strand: Direct

Name: yxjF [H]

Synonym: RHE_PF00089

Alternate gene names: 86360822

Gene position: 90199-90972 (Clockwise)

Preceding gene: 86360821

Following gene: 86360823

Centisome position: 14.04

GC content: 65.63

Gene sequence:

>774_bases
GTGAGCGTATCGGCGAGCGGAGAAGCAAGGATCGCGCTTGTCACTGGCGGTGGCACCGGCGTCGGGCGTGCCATCTCACG
AGGCCTCGGCGCTGCCGGGTACAGGGTCGTGATTTCAGGGCGGCGGGCCGATGTGCTTGAAAAGGCGGCGAACGAGCTAG
GCAGCCAAACGGGGGGCGAGTTTTTCGCGGTTCCCGCCGATGTCGGCAATCCCGCTTCGGTGCGGGCTCTCTTCGATGCG
ATTTCGCAGAGATACGGACGGCTCGACCTATTGGTCAACAATGCCGGCGTCACCGTGCCCGGCGTGCCGCTCGAGGAGGT
GTCCTTCGAGCAGTGGAACGCCATCGTCGCCGCCAATCTCACCGGCGCCTTCCTCTGCACCCAGCAGGCCTTCCGGCTGA
TGAAGAGCCAAAGCCCGCGCGGCGGCCGCATCATCAACAACGGCTCCGTCTCGGCTACCACACCGCGTCCCAATTCGGCG
CCCTATACGGCGACCAAGCACGCCATAACGGGGCTGACGAAATCCACCGCCCTCGACGGGCGCGAATTCGACATCGCCTG
CGGCCAGATCGATATCGGCAATGCCGCCAGCGACATGACGACGACGATTGCGGCGGGCGTGCTGCAGGCGAACGGCAGCA
TCGCCGCAGAGGCGACGATCGACCCGGCCTATATTGCCGACGCGGTCGTCTACATGGCCGGCCTGCCGCTCAGCGCCAAC
GTGCTGACCATGACCGTGATGGCGACGAAAATGCCCTTCGTCGGGCGGGGGTAA

Upstream 100 bases:

>100_bases
TCGATGCGATGAGAGCCTCTTCGCTCGGCTTTACGGCGGAAACGAGCTTCGACGAAATTCTGCAGGTGCATATCGAGGAT
GAACTCGGCGGGAGGATTGT

Downstream 100 bases:

>100_bases
GGCCTGCTGTCGCGGCCGAAGCGACATATATGCATTATGCAGTGCTCATGATCTGGGAGGAGGGAGTATGGCAAACGTTC
AGTTCGCGGATGTCCGGAAA

Product: oxidoreductase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSVSASGEARIALVTGGGTGVGRAISRGLGAAGYRVVISGRRADVLEKAANELGSQTGGEFFAVPADVGNPASVRALFDA
ISQRYGRLDLLVNNAGVTVPGVPLEEVSFEQWNAIVAANLTGAFLCTQQAFRLMKSQSPRGGRIINNGSVSATTPRPNSA
PYTATKHAITGLTKSTALDGREFDIACGQIDIGNAASDMTTTIAAGVLQANGSIAAEATIDPAYIADAVVYMAGLPLSAN
VLTMTVMATKMPFVGRG

Sequences:

>Translated_257_residues
MSVSASGEARIALVTGGGTGVGRAISRGLGAAGYRVVISGRRADVLEKAANELGSQTGGEFFAVPADVGNPASVRALFDA
ISQRYGRLDLLVNNAGVTVPGVPLEEVSFEQWNAIVAANLTGAFLCTQQAFRLMKSQSPRGGRIINNGSVSATTPRPNSA
PYTATKHAITGLTKSTALDGREFDIACGQIDIGNAASDMTTTIAAGVLQANGSIAAEATIDPAYIADAVVYMAGLPLSAN
VLTMTVMATKMPFVGRG
>Mature_256_residues
SVSASGEARIALVTGGGTGVGRAISRGLGAAGYRVVISGRRADVLEKAANELGSQTGGEFFAVPADVGNPASVRALFDAI
SQRYGRLDLLVNNAGVTVPGVPLEEVSFEQWNAIVAANLTGAFLCTQQAFRLMKSQSPRGGRIINNGSVSATTPRPNSAP
YTATKHAITGLTKSTALDGREFDIACGQIDIGNAASDMTTTIAAGVLQANGSIAAEATIDPAYIADAVVYMAGLPLSANV
LTMTVMATKMPFVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=236, Percent_Identity=30.5084745762712, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI4504505, Length=242, Percent_Identity=30.1652892561983, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=27.1186440677966, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI15277342, Length=235, Percent_Identity=30.6382978723404, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI31542939, Length=172, Percent_Identity=33.1395348837209, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI19923817, Length=194, Percent_Identity=31.4432989690722, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI224922801, Length=180, Percent_Identity=32.2222222222222, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI59889578, Length=180, Percent_Identity=32.7777777777778, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI209862901, Length=185, Percent_Identity=31.3513513513514, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI19923983, Length=185, Percent_Identity=31.3513513513514, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7706318, Length=165, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI32483357, Length=180, Percent_Identity=28.8888888888889, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI126723191, Length=190, Percent_Identity=27.8947368421053, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI33667109, Length=200, Percent_Identity=29.5, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1788459, Length=173, Percent_Identity=39.3063583815029, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787335, Length=205, Percent_Identity=33.1707317073171, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI2367175, Length=171, Percent_Identity=35.672514619883, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790717, Length=191, Percent_Identity=30.3664921465969, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789057, Length=186, Percent_Identity=32.258064516129, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787820, Length=250, Percent_Identity=27.6, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082160, Length=201, Percent_Identity=31.3432835820896, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082100, Length=196, Percent_Identity=33.1632653061224, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789208, Length=201, Percent_Identity=29.3532338308458, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789378, Length=183, Percent_Identity=31.6939890710383, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786812, Length=190, Percent_Identity=30, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786701, Length=254, Percent_Identity=27.9527559055118, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787526, Length=170, Percent_Identity=27.6470588235294, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=226, Percent_Identity=30.0884955752212, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=205, Percent_Identity=32.6829268292683, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=226, Percent_Identity=30.0884955752212, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=29.5154185022026, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=219, Percent_Identity=27.3972602739726, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17555612, Length=211, Percent_Identity=30.8056872037915, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=26.1538461538462, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=198, Percent_Identity=31.3131313131313, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=178, Percent_Identity=30.3370786516854, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=236, Percent_Identity=23.728813559322, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=194, Percent_Identity=29.3814432989691, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=25.3846153846154, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=177, Percent_Identity=28.8135593220339, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=243, Percent_Identity=27.9835390946502, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=25.7692307692308, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=178, Percent_Identity=29.2134831460674, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=176, Percent_Identity=31.8181818181818, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=156, Percent_Identity=32.0512820512821, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=176, Percent_Identity=27.8409090909091, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=176, Percent_Identity=23.2954545454545, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=26.8482490272374, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=199, Percent_Identity=26.1306532663317, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007236, Length=253, Percent_Identity=31.2252964426877, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24641232, Length=173, Percent_Identity=35.8381502890173, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI116007238, Length=179, Percent_Identity=36.3128491620112, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI116007234, Length=250, Percent_Identity=29.2, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI116007232, Length=180, Percent_Identity=32.7777777777778, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI281364494, Length=245, Percent_Identity=28.1632653061224, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI18859837, Length=238, Percent_Identity=31.9327731092437, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571387, Length=257, Percent_Identity=27.6264591439689, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24644339, Length=171, Percent_Identity=28.6549707602339, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648693, Length=174, Percent_Identity=32.183908045977, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355889, Length=174, Percent_Identity=32.183908045977, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357041, Length=175, Percent_Identity=29.1428571428571, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=28, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24639444, Length=201, Percent_Identity=29.3532338308458, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24584748, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161076933, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24663911, Length=243, Percent_Identity=25.5144032921811, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI17737361, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571526, Length=176, Percent_Identity=28.9772727272727, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24580925, Length=187, Percent_Identity=24.5989304812834, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21355319, Length=171, Percent_Identity=28.6549707602339, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364892, Length=183, Percent_Identity=32.7868852459016, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI23397609, Length=175, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24656154, Length=166, Percent_Identity=32.5301204819277, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19922628, Length=166, Percent_Identity=32.5301204819277, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355631, Length=225, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648944, Length=171, Percent_Identity=27.4853801169591, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574402, Length=180, Percent_Identity=30, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24584744, Length=180, Percent_Identity=30, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26278; Mature: 26147

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSASGEARIALVTGGGTGVGRAISRGLGAAGYRVVISGRRADVLEKAANELGSQTGGE
CCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC
FFAVPADVGNPASVRALFDAISQRYGRLDLLVNNAGVTVPGVPLEEVSFEQWNAIVAANL
EEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCEECCCCHHHCCHHHHCEEEEECC
TGAFLCTQQAFRLMKSQSPRGGRIINNGSVSATTPRPNSAPYTATKHAITGLTKSTALDG
CHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCCCCCCCCHHHHHHHCCCHHHCCCC
REFDIACGQIDIGNAASDMTTTIAAGVLQANGSIAAEATIDPAYIADAVVYMAGLPLSAN
CEEEEEECEEECCCCCHHHHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCH
VLTMTVMATKMPFVGRG
HHEEEEHHHCCCCCCCC
>Mature Secondary Structure 
SVSASGEARIALVTGGGTGVGRAISRGLGAAGYRVVISGRRADVLEKAANELGSQTGGE
CCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC
FFAVPADVGNPASVRALFDAISQRYGRLDLLVNNAGVTVPGVPLEEVSFEQWNAIVAANL
EEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCEECCCCHHHCCHHHHCEEEEECC
TGAFLCTQQAFRLMKSQSPRGGRIINNGSVSATTPRPNSAPYTATKHAITGLTKSTALDG
CHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCCCCCCCCHHHHHHHCCCHHHCCCC
REFDIACGQIDIGNAASDMTTTIAAGVLQANGSIAAEATIDPAYIADAVVYMAGLPLSAN
CEEEEEECEEECCCCCHHHHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCH
VLTMTVMATKMPFVGRG
HHEEEEHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]