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The map label for this gene is yciR [C]

Identifier: 85860973

GI number: 85860973

Start: 3131510

End: 3132898

Strand: Direct

Name: yciR [C]

Synonym: SYN_02092

Alternate gene names: 85860973

Gene position: 3131510-3132898 (Clockwise)

Preceding gene: 85860971

Following gene: 85860974

Centisome position: 98.5

GC content: 50.47

Gene sequence:

>1389_bases
ATGACAAGCATGAAGCTCACCATCAGCAGAAAATTGATCCTGACTCATTTCGCGATGGCTTTACTTGCTGTGCTGGCAGT
CGTCTATGCCCTGGATCGTTTTCGCACACTCAACGACCTGGCTTTTAAAATCATCCACGAAGATTTTTATCTCATCAACA
CCAGCAAATCGATGATTGACACCCTTCTGGCTCAGGAAAATGCTGAAAAAAAATATCTCGTTCTGAGAGATCCATCCTTT
GAAAAGATATTCCGGCAACGGGGCAGAGAATTTGAAGGAGCCTTGAAGGCACTGCAACGACGCCCATTTGCGGTCAGTAA
AGCCAATCCGGAACGCCTGAAAGAACTTCACAATCGTTATCAGTCCCTGTTCCAGCGGGAGCGGCGGCTGATTTCCGAGG
ATCGCATAGAGGAAGCCTTCACCCTGTCAGAAAAGGAAAGTCGGCTGCTTATCGAAAGGATGGCTTCCCAGCTCCGCTCT
CTGCAACAGAATGCGGAAAAGGAAATGGATTTCCGGATGAATACGATCAACCGTCTGGGAACCACGGCCTCACGGATTAC
CCTCGTGTTGACGGCTGTTACACTGATCATCGGCTTGCTCCTTGCAATGGCGACAACGATCAATATTTCCCGACCCCTGA
AAAAACTGGAAAAGGCGACGGAACGAATCGGCGAAGGCAATTTTGATTATCGGCCGGATATCGCCCGGCACGATGAAATC
GGCAGCCTGGCTCAGGCCTTTGGTTATATGGCTGAACGACTCAAAGAACTCGAGGCGCTGCATCTCGATGCGAGTCCCCT
GACCGGATTGCCCGGCAATCTGGCTATTGAAAAAGAAATCGGCAGGCGGTTGTCCGAAAAGCACCTGTTTTCCCTCTGTC
ATGTCGATCTGGACAATTTCAAGCCTTTTGCAGACCACTATGGCTACGCCTGGGGCAGTGAAGTCATCAAGGAAGTGGGG
CTGATGCTCGTTGCAGCCCTGGGTCGACGACCTGATCTGGAAAATGATGTATTTCTCGGGCACATCGGGGGCGATGATTT
TGTGATTATAGCCGATCCCAGACGGGCTGAGGAAATCAGCGGAGAGATGGTCCGCGTTTTTGATGAGCAGATTACCCGAT
TTTACAGTGAAAAAGACAGGAACAAGGGATTTATCATCGCCAGGGACCGCCAGGGCATTTATCGGAAGTATCCCCTGATG
ACGATCACGATTGCCATCGTCACCGACGACGGCCAACGCTTTGCCAATCCTCTGGTCATGGCCAAAAGGGCGGCAACGCT
GAAAGAATACGCAAAGGCCATGCCGGGAAGCAATTACATCAAGGAGGAGGATTTTGAAAAGGAAGCAGGATCAGGTGCTG
AGTCAGCTCCTTCCTTTAAATGCAGTTAA

Upstream 100 bases:

>100_bases
TCCCGTTGCTCGATGCGCCGAAATATATTAAATTAATAACATTCGTATCACCACGCCAACCGTTCGGTTTATATAAGCGA
ACCAGCCGTTTTCTTCTGGA

Downstream 100 bases:

>100_bases
AAACAGGGGCACGGAAATAAATGCCTCGGGCATGAAAAAAAGCGGACGGAAAAAGGGAACCCTTCTGCTCCGTGTCCTTT
TTCTTAACTTTCTTCTCTGT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Response Regulator Receiver Modulated Diguanylate Cyclase; Diguanylate Cyclase; EAL/GGDEF Domain-Containing Protein; GGDEF Domain-Containing Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; GGDEF Domain Protein; Signal Transduction Protein; Signaling Protein; Sensory Box/GGDEF Family Protein; Response Regulator Receiver; Ggdef Domain Protein; Response Regulator Receiver Protein; EAL Domain-Containing Protein; GGDEF/EAL Sensory Box Protein; Histidine Kinase; Two-Component System Response Regulator Receiver; Response Regulator; EAL Domain Protein; Sensor Protein; Sensory Box Histidine Kinase/Response Regulator; PAS Fold Family; Diguanylate Cyclase/Phosphodiesterase Family Protein; EAL Domain Proteni; Signal Protein; HAMP Domain-Containing Protein; EAL Domain/GGDEF Domain-Containing Protein; EAL Domain/GGDEF Domain Protein; CheY-Like Response Regulator Modulated Diguanylate Cyclase; Diguanylate Phosphodiesterase; GGDEFCBS:EAL Domain-Containing Protein; GGDEF Domain/HAMP Domain-Containing Protein; EAL Domain-Containing; GGDEF Family Protein; Diguanylate Cyclase/Phosphodiesterase With Cbs Domains; Methyl-Accepting Chemotaxis Sensory Transducer; Eal/Ggdef Domain Protein; Multi-Sensor Signal Transduction Histidine Kinase

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MTSMKLTISRKLILTHFAMALLAVLAVVYALDRFRTLNDLAFKIIHEDFYLINTSKSMIDTLLAQENAEKKYLVLRDPSF
EKIFRQRGREFEGALKALQRRPFAVSKANPERLKELHNRYQSLFQRERRLISEDRIEEAFTLSEKESRLLIERMASQLRS
LQQNAEKEMDFRMNTINRLGTTASRITLVLTAVTLIIGLLLAMATTINISRPLKKLEKATERIGEGNFDYRPDIARHDEI
GSLAQAFGYMAERLKELEALHLDASPLTGLPGNLAIEKEIGRRLSEKHLFSLCHVDLDNFKPFADHYGYAWGSEVIKEVG
LMLVAALGRRPDLENDVFLGHIGGDDFVIIADPRRAEEISGEMVRVFDEQITRFYSEKDRNKGFIIARDRQGIYRKYPLM
TITIAIVTDDGQRFANPLVMAKRAATLKEYAKAMPGSNYIKEEDFEKEAGSGAESAPSFKCS

Sequences:

>Translated_462_residues
MTSMKLTISRKLILTHFAMALLAVLAVVYALDRFRTLNDLAFKIIHEDFYLINTSKSMIDTLLAQENAEKKYLVLRDPSF
EKIFRQRGREFEGALKALQRRPFAVSKANPERLKELHNRYQSLFQRERRLISEDRIEEAFTLSEKESRLLIERMASQLRS
LQQNAEKEMDFRMNTINRLGTTASRITLVLTAVTLIIGLLLAMATTINISRPLKKLEKATERIGEGNFDYRPDIARHDEI
GSLAQAFGYMAERLKELEALHLDASPLTGLPGNLAIEKEIGRRLSEKHLFSLCHVDLDNFKPFADHYGYAWGSEVIKEVG
LMLVAALGRRPDLENDVFLGHIGGDDFVIIADPRRAEEISGEMVRVFDEQITRFYSEKDRNKGFIIARDRQGIYRKYPLM
TITIAIVTDDGQRFANPLVMAKRAATLKEYAKAMPGSNYIKEEDFEKEAGSGAESAPSFKCS
>Mature_461_residues
TSMKLTISRKLILTHFAMALLAVLAVVYALDRFRTLNDLAFKIIHEDFYLINTSKSMIDTLLAQENAEKKYLVLRDPSFE
KIFRQRGREFEGALKALQRRPFAVSKANPERLKELHNRYQSLFQRERRLISEDRIEEAFTLSEKESRLLIERMASQLRSL
QQNAEKEMDFRMNTINRLGTTASRITLVLTAVTLIIGLLLAMATTINISRPLKKLEKATERIGEGNFDYRPDIARHDEIG
SLAQAFGYMAERLKELEALHLDASPLTGLPGNLAIEKEIGRRLSEKHLFSLCHVDLDNFKPFADHYGYAWGSEVIKEVGL
MLVAALGRRPDLENDVFLGHIGGDDFVIIADPRRAEEISGEMVRVFDEQITRFYSEKDRNKGFIIARDRQGIYRKYPLMT
ITIAIVTDDGQRFANPLVMAKRAATLKEYAKAMPGSNYIKEEDFEKEAGSGAESAPSFKCS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52680; Mature: 52548

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSMKLTISRKLILTHFAMALLAVLAVVYALDRFRTLNDLAFKIIHEDFYLINTSKSMID
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHH
TLLAQENAEKKYLVLRDPSFEKIFRQRGREFEGALKALQRRPFAVSKANPERLKELHNRY
HHHHHCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
QSLFQRERRLISEDRIEEAFTLSEKESRLLIERMASQLRSLQQNAEKEMDFRMNTINRLG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TTASRITLVLTAVTLIIGLLLAMATTINISRPLKKLEKATERIGEGNFDYRPDIARHDEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
GSLAQAFGYMAERLKELEALHLDASPLTGLPGNLAIEKEIGRRLSEKHLFSLCHVDLDNF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHCC
KPFADHYGYAWGSEVIKEVGLMLVAALGRRPDLENDVFLGHIGGDDFVIIADPRRAEEIS
CCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHH
GEMVRVFDEQITRFYSEKDRNKGFIIARDRQGIYRKYPLMTITIAIVTDDGQRFANPLVM
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCEEEEEEEEEECCCHHHHHHHHH
AKRAATLKEYAKAMPGSNYIKEEDFEKEAGSGAESAPSFKCS
HHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSMKLTISRKLILTHFAMALLAVLAVVYALDRFRTLNDLAFKIIHEDFYLINTSKSMID
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHH
TLLAQENAEKKYLVLRDPSFEKIFRQRGREFEGALKALQRRPFAVSKANPERLKELHNRY
HHHHHCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
QSLFQRERRLISEDRIEEAFTLSEKESRLLIERMASQLRSLQQNAEKEMDFRMNTINRLG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TTASRITLVLTAVTLIIGLLLAMATTINISRPLKKLEKATERIGEGNFDYRPDIARHDEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
GSLAQAFGYMAERLKELEALHLDASPLTGLPGNLAIEKEIGRRLSEKHLFSLCHVDLDNF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHCC
KPFADHYGYAWGSEVIKEVGLMLVAALGRRPDLENDVFLGHIGGDDFVIIADPRRAEEIS
CCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHH
GEMVRVFDEQITRFYSEKDRNKGFIIARDRQGIYRKYPLMTITIAIVTDDGQRFANPLVM
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCEEEEEEEEEECCCHHHHHHHHH
AKRAATLKEYAKAMPGSNYIKEEDFEKEAGSGAESAPSFKCS
HHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA