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The map label for this gene is ybhR [H]

Identifier: 85860861

GI number: 85860861

Start: 3022538

End: 3023305

Strand: Direct

Name: ybhR [H]

Synonym: SYN_01665

Alternate gene names: 85860861

Gene position: 3022538-3023305 (Clockwise)

Preceding gene: 85860860

Following gene: 85860862

Centisome position: 95.07

GC content: 54.69

Gene sequence:

>768_bases
ATGATTAGCGGTCTTCGGGACAGTTACTACATCATGAAACGCGATCTTATCCGGGCGCTGCGTCAGAAAAGTCCACTGGT
CGGAGCAATCGTCCGCCCGGCGCTCTGGCTTTTCCTGCTTGGGACTGGACTCAAATTCGGTTTCGTCGCCCTGCCTCTGG
TCGGAATCAACTGGCAGCAGTATATCTTCCCCGGCATTATCGCTATGAATGTCCTCTTCTCCGGGGTCATGTCCGGAGCC
ACCATTGTCTGGGACCGTGAATTCGGTTTTCTGAAAGAGATCACCGTTTCTCCGATTCCCCGCTGGTCCATCATCCTCGG
CAAGGTCATGAGCGGCGCAATCATCGCCGGCTCTCAGGGAGTGATCGTGCTCGCAGTCTATCCGCTTCTCGGGCTTTCCC
TTGGTCTCCTGCAGTTGCTCCAGACCCTGCTGGCCATTTTTTTCATTGCACTGGCCGTAACTGCAGTCGGCGTGCTCCTC
GCAGCACGGATCCGCTCCCTGGAGGGGTTCGGCGCTGTCAATAATTTCGTGGTCATGCCGTGTTTTTTTCTCAGCGGCGC
CCTCCATCCCCTCTCCAATATTCCGGACTGGCTGAAGATTCTGATTTATCTCAATCCGTTCAGTTACGCCGTGGATCTCC
TGCGTGTCATTATCCTGGGACTGGACGGAGATCCCGCTTTCGATATCCTGGCCATCGCCCTATTCACCAATGTAATTTTC
ATGACGGCGCTCTATCTTTTCGCCCGACGGGGCAAGTATTATATCTGA

Upstream 100 bases:

>100_bases
TCGACGATCTTTTCCTCCACCTGACCGGACGCGATCTGCAGGATTCGGAAACCGGTGAACTGGAGCGGCTGAAGGCGACC
CTGCGCGTGCGGAGGATCAA

Downstream 100 bases:

>100_bases
CGGAATAAGCTTAATTTATTCCCGTAGTTTACTGACAGCAAAATTCCCAGAAAATGTTCTTTCGTGCCAGTTTCTGGTCA
ACCGAGCTTTTTCAACCGCT

Product: multidrug ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MISGLRDSYYIMKRDLIRALRQKSPLVGAIVRPALWLFLLGTGLKFGFVALPLVGINWQQYIFPGIIAMNVLFSGVMSGA
TIVWDREFGFLKEITVSPIPRWSIILGKVMSGAIIAGSQGVIVLAVYPLLGLSLGLLQLLQTLLAIFFIALAVTAVGVLL
AARIRSLEGFGAVNNFVVMPCFFLSGALHPLSNIPDWLKILIYLNPFSYAVDLLRVIILGLDGDPAFDILAIALFTNVIF
MTALYLFARRGKYYI

Sequences:

>Translated_255_residues
MISGLRDSYYIMKRDLIRALRQKSPLVGAIVRPALWLFLLGTGLKFGFVALPLVGINWQQYIFPGIIAMNVLFSGVMSGA
TIVWDREFGFLKEITVSPIPRWSIILGKVMSGAIIAGSQGVIVLAVYPLLGLSLGLLQLLQTLLAIFFIALAVTAVGVLL
AARIRSLEGFGAVNNFVVMPCFFLSGALHPLSNIPDWLKILIYLNPFSYAVDLLRVIILGLDGDPAFDILAIALFTNVIF
MTALYLFARRGKYYI
>Mature_255_residues
MISGLRDSYYIMKRDLIRALRQKSPLVGAIVRPALWLFLLGTGLKFGFVALPLVGINWQQYIFPGIIAMNVLFSGVMSGA
TIVWDREFGFLKEITVSPIPRWSIILGKVMSGAIIAGSQGVIVLAVYPLLGLSLGLLQLLQTLLAIFFIALAVTAVGVLL
AARIRSLEGFGAVNNFVVMPCFFLSGALHPLSNIPDWLKILIYLNPFSYAVDLLRVIILGLDGDPAFDILAIALFTNVIF
MTALYLFARRGKYYI

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=189, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28028; Mature: 28028

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISGLRDSYYIMKRDLIRALRQKSPLVGAIVRPALWLFLLGTGLKFGFVALPLVGINWQQ
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
YIFPGIIAMNVLFSGVMSGATIVWDREFGFLKEITVSPIPRWSIILGKVMSGAIIAGSQG
HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCHHHHHHHHHHCCEEEECCCC
VIVLAVYPLLGLSLGLLQLLQTLLAIFFIALAVTAVGVLLAARIRSLEGFGAVNNFVVMP
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
CFFLSGALHPLSNIPDWLKILIYLNPFSYAVDLLRVIILGLDGDPAFDILAIALFTNVIF
HHHHHCCCCHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
MTALYLFARRGKYYI
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MISGLRDSYYIMKRDLIRALRQKSPLVGAIVRPALWLFLLGTGLKFGFVALPLVGINWQQ
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
YIFPGIIAMNVLFSGVMSGATIVWDREFGFLKEITVSPIPRWSIILGKVMSGAIIAGSQG
HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCHHHHHHHHHHCCEEEECCCC
VIVLAVYPLLGLSLGLLQLLQTLLAIFFIALAVTAVGVLLAARIRSLEGFGAVNNFVVMP
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
CFFLSGALHPLSNIPDWLKILIYLNPFSYAVDLLRVIILGLDGDPAFDILAIALFTNVIF
HHHHHCCCCHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
MTALYLFARRGKYYI
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]