| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85860733
Identifier: 85860733
GI number: 85860733
Start: 2913962
End: 2915548
Strand: Direct
Name: 85860733
Synonym: SYN_02389
Alternate gene names: NA
Gene position: 2913962-2915548 (Clockwise)
Preceding gene: 85860732
Following gene: 85860739
Centisome position: 91.65
GC content: 56.08
Gene sequence:
>1587_bases ATGTCTCGAGATCAGCACACCATACAAAAAATGATTCCCCGAATCGGACTTCCCGGCACGGCATTGCGGTACGCCGGACT GAGGTGGCAATGGGTTGGTACCTTCGCACTGTTGCTCGTCTTGGCACTGGGGCTTCGTCTGCTGGCAATGGCAAACGTGC CGTTGATTCCCGAGGAGGCGTACTACTGGATGTACGCGCAACACGCTGAACTCAGCTACTTCGATCATCCACCGATGATC GCCTGGGTGATCGGTCTGGGAACGGCGGTTTTCGGCCATACGGAGTTTGGTGTCCGCATCGTCGGGAACCTGTTGATGCT TGGCGCGAGTTTGCTGATGTACCGATTCGGACGGGCCTGGTTCAGTCAGGCGGCCGGTGCGGTGGCAGCTTTGCTTCTGC AAGTCTTGCCGGTGTTTTTCGGTGTCGGGTTTATTGCGACGATGGACGCGGCGTTGGTTTTTTTCTGGATGCTCGGTCTG GTCGGCGTAACTGCCGCGTTGCGTGACAACCGAGCGTGGGGCTGGTATTTGGCCGGATTCGCCCTCGGTTCGGCCATGCT CAGTAAGTATACTGGCTTGTTCCTGGCTGTGGGGACAGGACTGGCGGTTGTTGCACATCGACCATGGCGGCGGCATCTGC AAACCATCCACCCATACCTATCGATCCTGTTCGCGGTGGCCCTTTTCAGCCCGGTCATCATCTGGAATGCACAGCACGAC TGGGCCAGTTTCCGTTTCCAGTTCCTGGATCGCTTCACCGCTGAGCCGATTAGAGTTAGCACGATGCTGACGTTCATAGG ATTTCAACTCCTGATCGCAACACCGATCATTTTCTGGGTTTACGGTCGACTCACTGTCCAACTGCTTCACAAACCGCTGC AGGCGTTGCCCCCGCAATCTACCCTCACGTTTGCATTCAGCTTGCCCCTGTTTTCGATAATGGCATATAAGTCGCTCCGG TATGGCGTCCACATCAACTGGACGCTCCCCGCATTTCTCAGTCTTTTGCCCGCCGTATCGCAATGGTTTATTGATCATGG ACTTGCCGACTTCAAACGCCGGCTGTGGACACGCGGATTTGCGTGGACGATCATACTCTGCGTTCTTTTCAATATCAGTT CGGCCGCATACCTGCTGATCCTCCAGCCACGCGTGCAATGGATCTCGGCATTCGGGCCGTGGAAGCAGTTAGCCTCTATC GTCGAGCAGTACGAAGATCAACTTGAGTCAGAGACCGGGCGTGAGCCCCTGATCATCGCGGAGGGCGCGTACCGCCTGGC CAGTGTCCTGGCCTTTTACCGCAGGCCAGTAGAACACCACGTGAACACAGCCTGCTACACAACCAGCCAGTGGGTTCTCG GAGGGAACGGCCTGGGTTATCCCTACTGGAGCGACCGTAATCGCTGGCAAGGGAGTGTCGCCATCTTTATCGACGACGAC GAAGGCGCTCTCGCAAGAACGCGGGATCACTTCGATGAAGTCCGGCTGGTAACAGACGCGCGTCTGCTTGAACTCGGACG GCATAAATACCAGCTCGTTATGGGCAAAAACCTGAAGTTAGGCAATGATTCGGTTTCCAGTAAATAA
Upstream 100 bases:
>100_bases TATGGATGGCCTGCCTGTCTTCAAGAAACTGGTCCAGGAAAATTTTACACAAAATAGTTGACACTACCTCTTTAACATTT CTGCATATGCGGATGGATAA
Downstream 100 bases:
>100_bases TGATCGAGACGATGCAGAATGCCGTTTCAAACGTTGGCTGTCCTTTTTTCATCCCCAACCTTAATCTCCTCGCAAAATCG ACTCTGTATCAACGGCTGAA
Product: dolichyl-phosphate-mannose--protein mannosyltransferase
Products: NA
Alternate protein names: Glycosyl Transferase Family Protein; Dolichyl-Phosphate-Mannose-Protein Mannosyltransferase; Glycosyl Transferase; Glycosyltransferase; 4-Amino-4-Deoxy-L-Arabinose Transferase; Dolichyl-Phosphate Beta-D-Mannosyltransferase; Glycosyltransferase Family; Undecaprenyl-PhosphomannoseProtein Mannosyltransferase; Dolichol Monophosphate Mannose Synthase; Family; Glycosyl/Arabinosyl/Mannosyl Transferase; Dolichyl-Phosphate Mannosyltransferase
Number of amino acids: Translated: 528; Mature: 527
Protein sequence:
>528_residues MSRDQHTIQKMIPRIGLPGTALRYAGLRWQWVGTFALLLVLALGLRLLAMANVPLIPEEAYYWMYAQHAELSYFDHPPMI AWVIGLGTAVFGHTEFGVRIVGNLLMLGASLLMYRFGRAWFSQAAGAVAALLLQVLPVFFGVGFIATMDAALVFFWMLGL VGVTAALRDNRAWGWYLAGFALGSAMLSKYTGLFLAVGTGLAVVAHRPWRRHLQTIHPYLSILFAVALFSPVIIWNAQHD WASFRFQFLDRFTAEPIRVSTMLTFIGFQLLIATPIIFWVYGRLTVQLLHKPLQALPPQSTLTFAFSLPLFSIMAYKSLR YGVHINWTLPAFLSLLPAVSQWFIDHGLADFKRRLWTRGFAWTIILCVLFNISSAAYLLILQPRVQWISAFGPWKQLASI VEQYEDQLESETGREPLIIAEGAYRLASVLAFYRRPVEHHVNTACYTTSQWVLGGNGLGYPYWSDRNRWQGSVAIFIDDD EGALARTRDHFDEVRLVTDARLLELGRHKYQLVMGKNLKLGNDSVSSK
Sequences:
>Translated_528_residues MSRDQHTIQKMIPRIGLPGTALRYAGLRWQWVGTFALLLVLALGLRLLAMANVPLIPEEAYYWMYAQHAELSYFDHPPMI AWVIGLGTAVFGHTEFGVRIVGNLLMLGASLLMYRFGRAWFSQAAGAVAALLLQVLPVFFGVGFIATMDAALVFFWMLGL VGVTAALRDNRAWGWYLAGFALGSAMLSKYTGLFLAVGTGLAVVAHRPWRRHLQTIHPYLSILFAVALFSPVIIWNAQHD WASFRFQFLDRFTAEPIRVSTMLTFIGFQLLIATPIIFWVYGRLTVQLLHKPLQALPPQSTLTFAFSLPLFSIMAYKSLR YGVHINWTLPAFLSLLPAVSQWFIDHGLADFKRRLWTRGFAWTIILCVLFNISSAAYLLILQPRVQWISAFGPWKQLASI VEQYEDQLESETGREPLIIAEGAYRLASVLAFYRRPVEHHVNTACYTTSQWVLGGNGLGYPYWSDRNRWQGSVAIFIDDD EGALARTRDHFDEVRLVTDARLLELGRHKYQLVMGKNLKLGNDSVSSK >Mature_527_residues SRDQHTIQKMIPRIGLPGTALRYAGLRWQWVGTFALLLVLALGLRLLAMANVPLIPEEAYYWMYAQHAELSYFDHPPMIA WVIGLGTAVFGHTEFGVRIVGNLLMLGASLLMYRFGRAWFSQAAGAVAALLLQVLPVFFGVGFIATMDAALVFFWMLGLV GVTAALRDNRAWGWYLAGFALGSAMLSKYTGLFLAVGTGLAVVAHRPWRRHLQTIHPYLSILFAVALFSPVIIWNAQHDW ASFRFQFLDRFTAEPIRVSTMLTFIGFQLLIATPIIFWVYGRLTVQLLHKPLQALPPQSTLTFAFSLPLFSIMAYKSLRY GVHINWTLPAFLSLLPAVSQWFIDHGLADFKRRLWTRGFAWTIILCVLFNISSAAYLLILQPRVQWISAFGPWKQLASIV EQYEDQLESETGREPLIIAEGAYRLASVLAFYRRPVEHHVNTACYTTSQWVLGGNGLGYPYWSDRNRWQGSVAIFIDDDE GALARTRDHFDEVRLVTDARLLELGRHKYQLVMGKNLKLGNDSVSSK
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59696; Mature: 59564
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRDQHTIQKMIPRIGLPGTALRYAGLRWQWVGTFALLLVLALGLRLLAMANVPLIPEEA CCCHHHHHHHHHHCCCCCCHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC YYWMYAQHAELSYFDHPPMIAWVIGLGTAVFGHTEFGVRIVGNLLMLGASLLMYRFGRAW EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FSQAAGAVAALLLQVLPVFFGVGFIATMDAALVFFWMLGLVGVTAALRDNRAWGWYLAGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH ALGSAMLSKYTGLFLAVGTGLAVVAHRPWRRHLQTIHPYLSILFAVALFSPVIIWNAQHD HHHHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCH WASFRFQFLDRFTAEPIRVSTMLTFIGFQLLIATPIIFWVYGRLTVQLLHKPLQALPPQS HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TLTFAFSLPLFSIMAYKSLRYGVHINWTLPAFLSLLPAVSQWFIDHGLADFKRRLWTRGF HHHEEHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCH AWTIILCVLFNISSAAYLLILQPRVQWISAFGPWKQLASIVEQYEDQLESETGREPLIIA HHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE EGAYRLASVLAFYRRPVEHHVNTACYTTSQWVLGGNGLGYPYWSDRNRWQGSVAIFIDDD CCHHHHHHHHHHHHCCHHHHCCHHEEECCCEEECCCCCCCCCCCCCCCCCCEEEEEEECC EGALARTRDHFDEVRLVTDARLLELGRHKYQLVMGKNLKLGNDSVSSK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC >Mature Secondary Structure SRDQHTIQKMIPRIGLPGTALRYAGLRWQWVGTFALLLVLALGLRLLAMANVPLIPEEA CCHHHHHHHHHHCCCCCCHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC YYWMYAQHAELSYFDHPPMIAWVIGLGTAVFGHTEFGVRIVGNLLMLGASLLMYRFGRAW EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FSQAAGAVAALLLQVLPVFFGVGFIATMDAALVFFWMLGLVGVTAALRDNRAWGWYLAGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH ALGSAMLSKYTGLFLAVGTGLAVVAHRPWRRHLQTIHPYLSILFAVALFSPVIIWNAQHD HHHHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCH WASFRFQFLDRFTAEPIRVSTMLTFIGFQLLIATPIIFWVYGRLTVQLLHKPLQALPPQS HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TLTFAFSLPLFSIMAYKSLRYGVHINWTLPAFLSLLPAVSQWFIDHGLADFKRRLWTRGF HHHEEHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCH AWTIILCVLFNISSAAYLLILQPRVQWISAFGPWKQLASIVEQYEDQLESETGREPLIIA HHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE EGAYRLASVLAFYRRPVEHHVNTACYTTSQWVLGGNGLGYPYWSDRNRWQGSVAIFIDDD CCHHHHHHHHHHHHCCHHHHCCHHEEECCCEEECCCCCCCCCCCCCCCCCCEEEEEEECC EGALARTRDHFDEVRLVTDARLLELGRHKYQLVMGKNLKLGNDSVSSK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA