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The map label for this gene is cspLA [H]

Identifier: 85860691

GI number: 85860691

Start: 2869699

End: 2869899

Strand: Direct

Name: cspLA [H]

Synonym: SYN_02432

Alternate gene names: 85860691

Gene position: 2869699-2869899 (Clockwise)

Preceding gene: 85860690

Following gene: 85860692

Centisome position: 90.26

GC content: 46.27

Gene sequence:

>201_bases
ATGCCAGAAGGAACAGTGAAATGGTTTAACGATTCAAAAGGATTCGGCTTTATCGAACAAGATGGCGGGAAGGATGTCTT
CGTGCATCATTCAGCCATCCAGGCAGAGGGGTTCAAATCGTTGTCAGAGGGAGATAGAGTGAGCTTTGATGTTGTCGTCG
GAAAGAAAGGCCCATCTGCTGAGAATGTTCGTAAGGTGTAA

Upstream 100 bases:

>100_bases
TTGTGCGGTTTTTTGTTTATACGAAAATACTGCAAGTCGATTCAGTTCGACAAAATTAAAAAGGTTCCCGGAAGGAACCA
GGAAAAAGGAGCAGGGAAAA

Downstream 100 bases:

>100_bases
GCCTTTAATCTCATTTTGATTGTAAAAGAACTCCTGTCAAGGAAACTTTATAATCAACTCAGATCAAGTTTTTAGATTTG
GTTTTGGCTGTTAACTCCAC

Product: cold shock protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MPEGTVKWFNDSKGFGFIEQDGGKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKKGPSAENVRKV

Sequences:

>Translated_66_residues
MPEGTVKWFNDSKGFGFIEQDGGKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKKGPSAENVRKV
>Mature_65_residues
PEGTVKWFNDSKGFGFIEQDGGKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKKGPSAENVRKV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=67.741935483871, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=61.5384615384615, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=62.5, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=59.0163934426229, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=55.7377049180328, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787834, Length=61, Percent_Identity=59.0163934426229, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=50.7462686567164, Blast_Score=69, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7184; Mature: 7053

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEGTVKWFNDSKGFGFIEQDGGKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKKGPSA
CCCCCEEEEECCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
ENVRKV
CCCCCC
>Mature Secondary Structure 
PEGTVKWFNDSKGFGFIEQDGGKDVFVHHSAIQAEGFKSLSEGDRVSFDVVVGKKGPSA
CCCCEEEEECCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
ENVRKV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]