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The map label for this gene is ybhS [H]

Identifier: 85860684

GI number: 85860684

Start: 2860098

End: 2861207

Strand: Direct

Name: ybhS [H]

Synonym: SYN_00243

Alternate gene names: 85860684

Gene position: 2860098-2861207 (Clockwise)

Preceding gene: 85860683

Following gene: 85860685

Centisome position: 89.96

GC content: 50.45

Gene sequence:

>1110_bases
ATGAAACTTCGTCGGGTCTCGGCGGTTGCGAAGAAAGAGATTATCCAGATCTTGAGGGATCCATTCAGCCTGGCGCTGGC
ATTTCTTATGCCGGTGCTCCTGCTCTTCATATTCGGCTATGCCATTACCCTCGATGTAGATAATCTGAAAACCACGGTCT
ACGATCAGGACAACAGCAGGGAGAGCCGGGAATTTCTTTCTGAAATGGTGCGGTCGGGATACTTCACGGTCGTTGGTTAT
CCATCAACCCCGGCGGAGATCACACCTTATCTGGACAAGGGTATTGCCCGCATCGCCATCTGGATTCCCTACGATTTCTC
CAAGAATCTCCGAACGGGGAAGGAGAGTCAGGTGCAGGTGCTTGTGGATGGAAGCGACTCCAATACCGCAACGATCGGAC
TTGCCTACGTGGCTGCCGTAGCGGATCTTTTTACTCAACGGATGAGCCCCACCAGAAGGCTTCCACCCATTGAACCTCGT
CTCCGGGTCTGGTACAACTCGGAACTCAAATCGAGGAACTTCATCATTCCCGGGCTTGTCGCGGTGATCATGGGAATCAT
CGCCGCGCTCCTTACCTCCCTCACCATCGCACGTGAATGGGAAAGAGGCACCATGGAACAGCTTGTATCTACACCGATAA
AGAAAACGGAATTGCTTCTTGGCAAATTGATCCCCTATTTTCTGATAGGCCTGATCGACGTTGCCATTTCTGTCATCATC
GGCATCTTCCTTTTTGGCGTCCCCTTCCGAGGAAGCGTCGTTCTCCTTTTTCTGGTTTCGAGCATCTTTCTCTTCGGGGG
GCTCAGCTTCGGCATACTTATTTCCGTAGCGACAAAGTCGCAGCTTTTGGCAAGCCAGGTGGCCATGGTTACTTCCTATC
TTCCAGCCTTTCTTCTCTCGGGTTTCATGTTCTCCATCGCTAATATGCCGCAGCCGCTTCAACTTATGACCCGGATCATC
CCAGCCAGGTACTTTGTCAGTCTCATCAAGGACATTTTTCTGAAGGCCAACCCCTTAAAATTTCTGGCCTTCGATACACT
CCTGTTGAGTGTTTTCGGGATTCTCGCCTTTGCGATGGCTAACAGAAAGTTCAAGAAAAAAATTATCTAA

Upstream 100 bases:

>100_bases
TCAAGGAAATGCTGGAACAGGATGGGATTCCGGTCAACGGGATCGAACAAATCCCGCCGTCCCTGGAAGATGTGTTTGTA
ACCTTGATTGAGGTATCGTA

Downstream 100 bases:

>100_bases
GCAATGTGAAACGCGGAAGCAGGAGTGTCATGTGACTGAACGCATTCGACAGGTGGTAAGAAAGGAGTTTATAGAGCTTT
TCCGTGACAAGCGGATGAAG

Product: export ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKLRRVSAVAKKEIIQILRDPFSLALAFLMPVLLLFIFGYAITLDVDNLKTTVYDQDNSRESREFLSEMVRSGYFTVVGY
PSTPAEITPYLDKGIARIAIWIPYDFSKNLRTGKESQVQVLVDGSDSNTATIGLAYVAAVADLFTQRMSPTRRLPPIEPR
LRVWYNSELKSRNFIIPGLVAVIMGIIAALLTSLTIAREWERGTMEQLVSTPIKKTELLLGKLIPYFLIGLIDVAISVII
GIFLFGVPFRGSVVLLFLVSSIFLFGGLSFGILISVATKSQLLASQVAMVTSYLPAFLLSGFMFSIANMPQPLQLMTRII
PARYFVSLIKDIFLKANPLKFLAFDTLLLSVFGILAFAMANRKFKKKII

Sequences:

>Translated_369_residues
MKLRRVSAVAKKEIIQILRDPFSLALAFLMPVLLLFIFGYAITLDVDNLKTTVYDQDNSRESREFLSEMVRSGYFTVVGY
PSTPAEITPYLDKGIARIAIWIPYDFSKNLRTGKESQVQVLVDGSDSNTATIGLAYVAAVADLFTQRMSPTRRLPPIEPR
LRVWYNSELKSRNFIIPGLVAVIMGIIAALLTSLTIAREWERGTMEQLVSTPIKKTELLLGKLIPYFLIGLIDVAISVII
GIFLFGVPFRGSVVLLFLVSSIFLFGGLSFGILISVATKSQLLASQVAMVTSYLPAFLLSGFMFSIANMPQPLQLMTRII
PARYFVSLIKDIFLKANPLKFLAFDTLLLSVFGILAFAMANRKFKKKII
>Mature_369_residues
MKLRRVSAVAKKEIIQILRDPFSLALAFLMPVLLLFIFGYAITLDVDNLKTTVYDQDNSRESREFLSEMVRSGYFTVVGY
PSTPAEITPYLDKGIARIAIWIPYDFSKNLRTGKESQVQVLVDGSDSNTATIGLAYVAAVADLFTQRMSPTRRLPPIEPR
LRVWYNSELKSRNFIIPGLVAVIMGIIAALLTSLTIAREWERGTMEQLVSTPIKKTELLLGKLIPYFLIGLIDVAISVII
GIFLFGVPFRGSVVLLFLVSSIFLFGGLSFGILISVATKSQLLASQVAMVTSYLPAFLLSGFMFSIANMPQPLQLMTRII
PARYFVSLIKDIFLKANPLKFLAFDTLLLSVFGILAFAMANRKFKKKII

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=341, Percent_Identity=41.9354838709677, Blast_Score=269, Evalue=2e-73,
Organism=Escherichia coli, GI1787010, Length=367, Percent_Identity=32.6975476839237, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI48994943, Length=341, Percent_Identity=29.0322580645161, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI226510979, Length=326, Percent_Identity=27.3006134969325, Blast_Score=89, Evalue=7e-19,
Organism=Drosophila melanogaster, GI85725260, Length=406, Percent_Identity=22.4137931034483, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI85725262, Length=406, Percent_Identity=22.4137931034483, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650855, Length=364, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24650853, Length=364, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41144; Mature: 41144

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRRVSAVAKKEIIQILRDPFSLALAFLMPVLLLFIFGYAITLDVDNLKTTVYDQDNSR
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCH
ESREFLSEMVRSGYFTVVGYPSTPAEITPYLDKGIARIAIWIPYDFSKNLRTGKESQVQV
HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEE
LVDGSDSNTATIGLAYVAAVADLFTQRMSPTRRLPPIEPRLRVWYNSELKSRNFIIPGLV
EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCCCCCCHHHHH
AVIMGIIAALLTSLTIAREWERGTMEQLVSTPIKKTELLLGKLIPYFLIGLIDVAISVII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFLFGVPFRGSVVLLFLVSSIFLFGGLSFGILISVATKSQLLASQVAMVTSYLPAFLLS
HHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFMFSIANMPQPLQLMTRIIPARYFVSLIKDIFLKANPLKFLAFDTLLLSVFGILAFAMA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
NRKFKKKII
HHHHHHCCC
>Mature Secondary Structure
MKLRRVSAVAKKEIIQILRDPFSLALAFLMPVLLLFIFGYAITLDVDNLKTTVYDQDNSR
CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCH
ESREFLSEMVRSGYFTVVGYPSTPAEITPYLDKGIARIAIWIPYDFSKNLRTGKESQVQV
HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEE
LVDGSDSNTATIGLAYVAAVADLFTQRMSPTRRLPPIEPRLRVWYNSELKSRNFIIPGLV
EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCCCCCCHHHHH
AVIMGIIAALLTSLTIAREWERGTMEQLVSTPIKKTELLLGKLIPYFLIGLIDVAISVII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFLFGVPFRGSVVLLFLVSSIFLFGGLSFGILISVATKSQLLASQVAMVTSYLPAFLLS
HHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFMFSIANMPQPLQLMTRIIPARYFVSLIKDIFLKANPLKFLAFDTLLLSVFGILAFAMA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
NRKFKKKII
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]