Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 85860667

GI number: 85860667

Start: 2841315

End: 2842616

Strand: Direct

Name: yebA [H]

Synonym: SYN_02623

Alternate gene names: 85860667

Gene position: 2841315-2842616 (Clockwise)

Preceding gene: 85860666

Following gene: 85860672

Centisome position: 89.37

GC content: 49.92

Gene sequence:

>1302_bases
ATGCAGAGAGGTCTCATGAAAAAAGCATTGATACTGTCTGTTGTTGTCTTCATCATTGTTTCCATCGTCGGCCCCACGGC
TTTCCTGACCATTCCGGCCGATCTAAATCTCCTGGAAGAGAAGGAGGAAGAGGGAAATGATCAAGTCCGCATTTCAGAGT
CGAAAGAGTTTCATGAAGTCAAAGGAAAAATCAGAGAAGGCGAGACCCTTTTTGACATTTTCAAAAAATACGGGCTTCAT
CCGGGCGATCTTTTCAGTTTGAGAGAAGCGTCGGCCGATATTCATAAGCTCCGTAATCTGCGGGTAGATCAGCCTTATCG
GATTCTCTTCGACGCGGACAAGCAGATAAACTCCTTCACGTACTGGATAGACGACGATACGATCCTGAATATTACGTGCG
GCGAAAACGGTTTCTGCGCGGAAAAAATCCCCGTTTCCTACGAAAAAAGGACAGAGCAACTTGCCGGGGTAATTAAGGAC
AATCTCATTTCCTCGCTGAGCCAGGACAAAGAATCCCTTATGCTCGCCCTCGATCTTTCCGATATCTTTGCCTGGGACAT
CGATTTTGCCACAGATATAAGAAAGGGCGACACCTTCAAAGTCGTCGTGGAGGGATTGTACCTTAACGGGGAATTCAGGA
AATACGGAAGAATTCTTTCCGCCGAAATCGTCAACAAGGGAGAACCATACCACGCCTACCGCTTTGAAGATGAAGAAGGC
GTGGATTATTATGATGCAGCGGGCAGGTCTCTGAAAAAGGCTTTTCTGAAAGCGCCCCTGAGTTTCAGACGCATCAGTTC
GAATTTCTCCCGGGGGAGATACCATCCGATCCTCAAGATTACCCGACCGCACCACGGGATCGACTACGCAGCGCTTCAGG
GTACTCCTGTTTCGTCGGCAGGTGATGGAACGGTCGTTTTTGCCGGCAAAAGGGGACAGTACGGCAATCTCGTGATTCTG
AGGCACCGCAACGGGTACACGACCTATTACGGCCATTTGTCGAAAATCAACAGCAATGTGAGAAAGGGAGTTCGAATAGC
TCAAGGTTCTCTGATAGGAAATGTCGGGGCGACGGGGCTCGCGACGGGTCCACATCTCCATTACGAGATGCGGATCAACG
ACAGGCCCGTAAACCCGCTCTCGATAAAGATTCCCCGGGGCAGGACCATCACCGGGAAATCGATGGCTGAATTTGCCCGC
GTTAAAGCCGCCATGGATATTGAACTTGCATCCGTTTCTTCCTCGACATTCCTGGCTTCCCAAAAGGGCACGCCCGAAAA
GGCAGTCAACAACGGAGGATAA

Upstream 100 bases:

>100_bases
ACTTGATGTATCCGCAAACCTGTTCACCGGTGAACACAGTTACAGCAGATAAGCCGGGAGCCTCAACCACTTTTCAGATA
ATCAGCATTATTCTGCAGGT

Downstream 100 bases:

>100_bases
CCACATGACAGAGCAGATCGGGAGTTCCTGATCCTGCTTGCTGAGCGAGAATTTTTCTTCCGGCTCAGAGCAGTCCCGCA
ATGAGAATGATGCCATTGAT

Product: peptidoglycan-specific endopeptidase, M23 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MQRGLMKKALILSVVVFIIVSIVGPTAFLTIPADLNLLEEKEEEGNDQVRISESKEFHEVKGKIREGETLFDIFKKYGLH
PGDLFSLREASADIHKLRNLRVDQPYRILFDADKQINSFTYWIDDDTILNITCGENGFCAEKIPVSYEKRTEQLAGVIKD
NLISSLSQDKESLMLALDLSDIFAWDIDFATDIRKGDTFKVVVEGLYLNGEFRKYGRILSAEIVNKGEPYHAYRFEDEEG
VDYYDAAGRSLKKAFLKAPLSFRRISSNFSRGRYHPILKITRPHHGIDYAALQGTPVSSAGDGTVVFAGKRGQYGNLVIL
RHRNGYTTYYGHLSKINSNVRKGVRIAQGSLIGNVGATGLATGPHLHYEMRINDRPVNPLSIKIPRGRTITGKSMAEFAR
VKAAMDIELASVSSSTFLASQKGTPEKAVNNGG

Sequences:

>Translated_433_residues
MQRGLMKKALILSVVVFIIVSIVGPTAFLTIPADLNLLEEKEEEGNDQVRISESKEFHEVKGKIREGETLFDIFKKYGLH
PGDLFSLREASADIHKLRNLRVDQPYRILFDADKQINSFTYWIDDDTILNITCGENGFCAEKIPVSYEKRTEQLAGVIKD
NLISSLSQDKESLMLALDLSDIFAWDIDFATDIRKGDTFKVVVEGLYLNGEFRKYGRILSAEIVNKGEPYHAYRFEDEEG
VDYYDAAGRSLKKAFLKAPLSFRRISSNFSRGRYHPILKITRPHHGIDYAALQGTPVSSAGDGTVVFAGKRGQYGNLVIL
RHRNGYTTYYGHLSKINSNVRKGVRIAQGSLIGNVGATGLATGPHLHYEMRINDRPVNPLSIKIPRGRTITGKSMAEFAR
VKAAMDIELASVSSSTFLASQKGTPEKAVNNGG
>Mature_433_residues
MQRGLMKKALILSVVVFIIVSIVGPTAFLTIPADLNLLEEKEEEGNDQVRISESKEFHEVKGKIREGETLFDIFKKYGLH
PGDLFSLREASADIHKLRNLRVDQPYRILFDADKQINSFTYWIDDDTILNITCGENGFCAEKIPVSYEKRTEQLAGVIKD
NLISSLSQDKESLMLALDLSDIFAWDIDFATDIRKGDTFKVVVEGLYLNGEFRKYGRILSAEIVNKGEPYHAYRFEDEEG
VDYYDAAGRSLKKAFLKAPLSFRRISSNFSRGRYHPILKITRPHHGIDYAALQGTPVSSAGDGTVVFAGKRGQYGNLVIL
RHRNGYTTYYGHLSKINSNVRKGVRIAQGSLIGNVGATGLATGPHLHYEMRINDRPVNPLSIKIPRGRTITGKSMAEFAR
VKAAMDIELASVSSSTFLASQKGTPEKAVNNGG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=340, Percent_Identity=35.5882352941176, Blast_Score=184, Evalue=7e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48258; Mature: 48258

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRGLMKKALILSVVVFIIVSIVGPTAFLTIPADLNLLEEKEEEGNDQVRISESKEFHEV
CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCHHHHHH
KGKIREGETLFDIFKKYGLHPGDLFSLREASADIHKLRNLRVDQPYRILFDADKQINSFT
HCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEE
YWIDDDTILNITCGENGFCAEKIPVSYEKRTEQLAGVIKDNLISSLSQDKESLMLALDLS
EEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHH
DIFAWDIDFATDIRKGDTFKVVVEGLYLNGEFRKYGRILSAEIVNKGEPYHAYRFEDEEG
HHEEEECCHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
VDYYDAAGRSLKKAFLKAPLSFRRISSNFSRGRYHPILKITRPHHGIDYAALQGTPVSSA
CCHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCC
GDGTVVFAGKRGQYGNLVILRHRNGYTTYYGHLSKINSNVRKGVRIAQGSLIGNVGATGL
CCCEEEEEECCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHCEEEECCCEEECCCCCCC
ATGPHLHYEMRINDRPVNPLSIKIPRGRTITGKSMAEFARVKAAMDIELASVSSSTFLAS
CCCCEEEEEEEECCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHEEEEEECCCCEEEEC
QKGTPEKAVNNGG
CCCCCHHHCCCCC
>Mature Secondary Structure
MQRGLMKKALILSVVVFIIVSIVGPTAFLTIPADLNLLEEKEEEGNDQVRISESKEFHEV
CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCHHHHHH
KGKIREGETLFDIFKKYGLHPGDLFSLREASADIHKLRNLRVDQPYRILFDADKQINSFT
HCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEE
YWIDDDTILNITCGENGFCAEKIPVSYEKRTEQLAGVIKDNLISSLSQDKESLMLALDLS
EEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHH
DIFAWDIDFATDIRKGDTFKVVVEGLYLNGEFRKYGRILSAEIVNKGEPYHAYRFEDEEG
HHEEEECCHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
VDYYDAAGRSLKKAFLKAPLSFRRISSNFSRGRYHPILKITRPHHGIDYAALQGTPVSSA
CCHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCC
GDGTVVFAGKRGQYGNLVILRHRNGYTTYYGHLSKINSNVRKGVRIAQGSLIGNVGATGL
CCCEEEEEECCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHCEEEECCCEEECCCCCCC
ATGPHLHYEMRINDRPVNPLSIKIPRGRTITGKSMAEFARVKAAMDIELASVSSSTFLAS
CCCCEEEEEEEECCCCCCCEEEEECCCCEECCHHHHHHHHHHHHHEEEEEECCCCEEEEC
QKGTPEKAVNNGG
CCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]