| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is paaY [H]
Identifier: 85860392
GI number: 85860392
Start: 2562723
End: 2563247
Strand: Direct
Name: paaY [H]
Synonym: SYN_01169
Alternate gene names: 85860392
Gene position: 2562723-2563247 (Clockwise)
Preceding gene: 85860391
Following gene: 85860393
Centisome position: 80.61
GC content: 58.48
Gene sequence:
>525_bases ATGGCGCTTTATCAGTACGGCGACCGGATACCCAGAATCGGCAGGGACGTTTATGTCAGCGATTCCGCCCGGGTGATCGG GGATGTCGAGATCGGAGACGGATGCTATATCGGCCATGGAGCGATCCTCCGGGGAGATTACGGCAGTATTCGACTCGGCG CAGGAACCGCCATCGAGGAAAATGCCGTGATTCATATCCGGCCGGAGGGGTTGAGTGTCCTTGGGGAACGGGTTACCGTC GGCCATGGGGCGATTCTCCACGGCGACCTGATCGATGATTTTGCCGTGATCGGCATGGGGGCGGTGCTCAGCCTGAACGT GGTTGTTGGGAAATGGGCCATCGTCGGCGAAGGAACAGTTCTGCCCAGCAACACACGGATCGAGGCGGAAAAATTCGTTG CCGGAGTTCCATGGAAGGTGATGGGAGACGTCCAGCCCCGACACAAGGAGTTCTGGACCTGGGGCAAGCAGCTCTATGTG GACCTCGCCAAATCTTATCCGGAGAAGCTCAAGCGCCTGGATTGA
Upstream 100 bases:
>100_bases CAACCAGAGAGAAGCCGATAGCGAAGACGGTGAAAGGTTCACTTCGATGTGGAATCGGAATGACATCATGATCTGACCAG GCAGAGGAGGAATTTCACGT
Downstream 100 bases:
>100_bases AGGTTCCGTTCGGGAATAATACATAAAAGAAATTGACCTTTGAAAGGAGGTCGAAATGTTTAAACTTAAATTCGATGAAA ACCGTTGCCTGACCTGTCCG
Product: acetyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MALYQYGDRIPRIGRDVYVSDSARVIGDVEIGDGCYIGHGAILRGDYGSIRLGAGTAIEENAVIHIRPEGLSVLGERVTV GHGAILHGDLIDDFAVIGMGAVLSLNVVVGKWAIVGEGTVLPSNTRIEAEKFVAGVPWKVMGDVQPRHKEFWTWGKQLYV DLAKSYPEKLKRLD
Sequences:
>Translated_174_residues MALYQYGDRIPRIGRDVYVSDSARVIGDVEIGDGCYIGHGAILRGDYGSIRLGAGTAIEENAVIHIRPEGLSVLGERVTV GHGAILHGDLIDDFAVIGMGAVLSLNVVVGKWAIVGEGTVLPSNTRIEAEKFVAGVPWKVMGDVQPRHKEFWTWGKQLYV DLAKSYPEKLKRLD >Mature_173_residues ALYQYGDRIPRIGRDVYVSDSARVIGDVEIGDGCYIGHGAILRGDYGSIRLGAGTAIEENAVIHIRPEGLSVLGERVTVG HGAILHGDLIDDFAVIGMGAVLSLNVVVGKWAIVGEGTVLPSNTRIEAEKFVAGVPWKVMGDVQPRHKEFWTWGKQLYVD LAKSYPEKLKRLD
Specific function: Phenylacetic acid aerobic catabolism. [C]
COG id: COG0663
COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family [H]
Homologues:
Organism=Escherichia coli, GI1787667, Length=174, Percent_Identity=32.7586206896552, Blast_Score=99, Evalue=1e-22, Organism=Escherichia coli, GI87081681, Length=162, Percent_Identity=33.9506172839506, Blast_Score=91, Evalue=4e-20, Organism=Escherichia coli, GI87082240, Length=174, Percent_Identity=31.6091954022989, Blast_Score=90, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011974 - InterPro: IPR011004 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18927; Mature: 18796
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALYQYGDRIPRIGRDVYVSDSARVIGDVEIGDGCYIGHGAILRGDYGSIRLGAGTAIEE CCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCEEECCCEEEECCCCCEEECCCCEECC NAVIHIRPEGLSVLGERVTVGHGAILHGDLIDDFAVIGMGAVLSLNVVVGKWAIVGEGTV CCEEEECCCCHHHHCCEEEECCCEEEECCHHHHHHHHCCCHHEEEEEEEEEEEEEECCEE LPSNTRIEAEKFVAGVPWKVMGDVQPRHKEFWTWGKQLYVDLAKSYPEKLKRLD CCCCCCEEHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ALYQYGDRIPRIGRDVYVSDSARVIGDVEIGDGCYIGHGAILRGDYGSIRLGAGTAIEE CCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCEEECCCEEEECCCCCEEECCCCEECC NAVIHIRPEGLSVLGERVTVGHGAILHGDLIDDFAVIGMGAVLSLNVVVGKWAIVGEGTV CCEEEECCCCHHHHCCEEEECCCEEEECCHHHHHHHHCCCHHEEEEEEEEEEEEEECCEE LPSNTRIEAEKFVAGVPWKVMGDVQPRHKEFWTWGKQLYVDLAKSYPEKLKRLD CCCCCCEEHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9748275; 9097039; 9278503 [H]