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The map label for this gene is nodJ [H]

Identifier: 85860166

GI number: 85860166

Start: 2373086

End: 2373877

Strand: Direct

Name: nodJ [H]

Synonym: SYN_00773

Alternate gene names: 85860166

Gene position: 2373086-2373877 (Clockwise)

Preceding gene: 85860165

Following gene: 85860184

Centisome position: 74.64

GC content: 48.48

Gene sequence:

>792_bases
ATGAAACCCTTCACCACAGAAGTCATAACCTCCCGCTTATGGAAAGTCTGGTACAGGAATCTGGTGGTTTACCGTCAGAA
CTGGAAAGTGAATTTTATTCCTCCGTTACTGGAACCGCTTTTTTATCTCCTCGCCTTCGGAATCGGCCTCAGCAGTCTGG
TCGGCAGCATTTCTTACGGCAATCAGCAGATTACATACGTCCAGTTCATCGCTCCCGCACTTCTTGCCATTAATATCATG
AATAACGCCTTCTTTGAAAATACTTACAGCTCCTACGTCAGAATGTATTACCAGAAAACGTTTGACGCCATGATGGCGAC
CCCTTTGACCCTCGAAGAAATCATCACGGGTGAGATCTTCTGGGGAGCCACAAGATCGGTGATGGCGACCGCCATCATGC
TGTTTGTCGTCAGCTTTTTCGGCGTTCTCCACTACCCCCACGCCCTGTTGATTATCCCTCTCGGTTTTCTCGGCGGCATC
GCCTTCGGCTCGCTGGGTATGTTATTCACAAGCAAGGTAAAAAACATCGACCTCTTCAACATACCGATTTTTTTAATTAT
CACCCCGATGTATCTCTTCAGCGGCACGTTTTTCCCATTGGAAAATCTCCCCCTCTGGGCTCGTTATCTGGCTCAGACTC
TGCCCCTTACCCATCTTGTCAACCTGGTCCGTTCCCTGGGGCTGGGTCATTATGATGCCTCTCTTCTCTGGGGGCTCTTG
TATCTGATCATTTTCTGCCTGATTCTTTTCCCGGTTTCCGTTGTTTCCATGCATAAGCGGCTCATCAAATAA

Upstream 100 bases:

>100_bases
ATCACGAAATCAGCGCACATTGCAGTCATGAAGGCTGCATATTGCGCATGGCTACACTGGAGGATGTTTTTCTGAAACTG
ACGGGGAGGGAACTGAGAGA

Downstream 100 bases:

>100_bases
TTTACTTCTCGTCTTTTATCAAAGAATGATTTCGATTGAGGCCGTGTTGATTATCTTCCATTTCCCAGATTCGAGAGGAT
ATCCGGCCTTCACGGCAGGA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKPFTTEVITSRLWKVWYRNLVVYRQNWKVNFIPPLLEPLFYLLAFGIGLSSLVGSISYGNQQITYVQFIAPALLAINIM
NNAFFENTYSSYVRMYYQKTFDAMMATPLTLEEIITGEIFWGATRSVMATAIMLFVVSFFGVLHYPHALLIIPLGFLGGI
AFGSLGMLFTSKVKNIDLFNIPIFLIITPMYLFSGTFFPLENLPLWARYLAQTLPLTHLVNLVRSLGLGHYDASLLWGLL
YLIIFCLILFPVSVVSMHKRLIK

Sequences:

>Translated_263_residues
MKPFTTEVITSRLWKVWYRNLVVYRQNWKVNFIPPLLEPLFYLLAFGIGLSSLVGSISYGNQQITYVQFIAPALLAINIM
NNAFFENTYSSYVRMYYQKTFDAMMATPLTLEEIITGEIFWGATRSVMATAIMLFVVSFFGVLHYPHALLIIPLGFLGGI
AFGSLGMLFTSKVKNIDLFNIPIFLIITPMYLFSGTFFPLENLPLWARYLAQTLPLTHLVNLVRSLGLGHYDASLLWGLL
YLIIFCLILFPVSVVSMHKRLIK
>Mature_263_residues
MKPFTTEVITSRLWKVWYRNLVVYRQNWKVNFIPPLLEPLFYLLAFGIGLSSLVGSISYGNQQITYVQFIAPALLAINIM
NNAFFENTYSSYVRMYYQKTFDAMMATPLTLEEIITGEIFWGATRSVMATAIMLFVVSFFGVLHYPHALLIIPLGFLGGI
AFGSLGMLFTSKVKNIDLFNIPIFLIITPMYLFSGTFFPLENLPLWARYLAQTLPLTHLVNLVRSLGLGHYDASLLWGLL
YLIIFCLILFPVSVVSMHKRLIK

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=240, Percent_Identity=25, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30023; Mature: 30023

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPFTTEVITSRLWKVWYRNLVVYRQNWKVNFIPPLLEPLFYLLAFGIGLSSLVGSISYG
CCCHHHHHHHHHHHHHHHHHHHEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
NQQITYVQFIAPALLAINIMNNAFFENTYSSYVRMYYQKTFDAMMATPLTLEEIITGEIF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
WGATRSVMATAIMLFVVSFFGVLHYPHALLIIPLGFLGGIAFGSLGMLFTSKVKNIDLFN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC
IPIFLIITPMYLFSGTFFPLENLPLWARYLAQTLPLTHLVNLVRSLGLGHYDASLLWGLL
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHH
YLIIFCLILFPVSVVSMHKRLIK
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPFTTEVITSRLWKVWYRNLVVYRQNWKVNFIPPLLEPLFYLLAFGIGLSSLVGSISYG
CCCHHHHHHHHHHHHHHHHHHHEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
NQQITYVQFIAPALLAINIMNNAFFENTYSSYVRMYYQKTFDAMMATPLTLEEIITGEIF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
WGATRSVMATAIMLFVVSFFGVLHYPHALLIIPLGFLGGIAFGSLGMLFTSKVKNIDLFN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC
IPIFLIITPMYLFSGTFFPLENLPLWARYLAQTLPLTHLVNLVRSLGLGHYDASLLWGLL
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHH
YLIIFCLILFPVSVVSMHKRLIK
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3019841; 3419422 [H]