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The map label for this gene is yjdF [H]

Identifier: 85859950

GI number: 85859950

Start: 2178202

End: 2178906

Strand: Direct

Name: yjdF [H]

Synonym: SYN_00689

Alternate gene names: 85859950

Gene position: 2178202-2178906 (Clockwise)

Preceding gene: 85859949

Following gene: 85859951

Centisome position: 68.51

GC content: 47.52

Gene sequence:

>705_bases
TTGTTTTGTTATCTTCCGGAAAGTCGGCCGCCTGATATTCGGAAGAATGAAATTTCAACAGAGATAACTTGTCGTGAGAA
AAGACCAATGTTAAAACAAAACCGGATTCTGATCCTTTATATCATCATCTTTTTTCTTGCCCTGATCCTCTCAGGAATCC
ATCCAAAAGATCAACTGGTCTGGTTCCTGGAGGTCTCGCCGGCGGTGATGGCTCTTGCCATCCTGGCCGTCAGTTTCAAA
AAATTCCGTTTCTCGAATCTCGTTTACTTTCTCATTCTTGTCCACTCCATCGTTCTGATGATCGGGGGGCACTGGACATA
TGCCGAAGTCCCTTTTTTCAACTGGCTAAGGGATATCGGGATATTCTCCCGCAATAATTATGACAAAGTTGGGCATTTCA
TGCAGGGTTTTGTTCCCGTCCTGGTCGCGAGAGAAGTCATAATCCGGAAGGACATCGTCAATGGCGGGAGATGGACGAAC
TTTTTTTCCATCGCCGTAGTCCTGGCTGCAAGTGCGTGCTATGAATTTATCGAATGGTGGATTTCCCTTCTGAGTGGAAG
CAGGGGCGACGCGTTTCTGGGAACGCAGGGATATACCTGGGACACTCAGTCCGACATGTTTTTCTGCCTGATCGGCGCCG
TTGCTGCGATAATGACACTGGCCAGGATTCATGACAGGATGATTCGCGATTCACAGCATTCATGA

Upstream 100 bases:

>100_bases
CAAATCCCCTGATTTCCACACTGGAGTTGATCGGCGCCATATTGACAGCCCTGCTCGCTGTCCTTGTTCCTGTTCTCTGC
CTGATACTCGTCGGCTTTTT

Downstream 100 bases:

>100_bases
GTTCTCATCACGAATCGGCCGGATTGAAAACTGTTTTCTCTGGCAATATCGGAATGGCCGCGGATTAACGGAGCATCAGG
AGAACAATTTTTAATTTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MFCYLPESRPPDIRKNEISTEITCREKRPMLKQNRILILYIIIFFLALILSGIHPKDQLVWFLEVSPAVMALAILAVSFK
KFRFSNLVYFLILVHSIVLMIGGHWTYAEVPFFNWLRDIGIFSRNNYDKVGHFMQGFVPVLVAREVIIRKDIVNGGRWTN
FFSIAVVLAASACYEFIEWWISLLSGSRGDAFLGTQGYTWDTQSDMFFCLIGAVAAIMTLARIHDRMIRDSQHS

Sequences:

>Translated_234_residues
MFCYLPESRPPDIRKNEISTEITCREKRPMLKQNRILILYIIIFFLALILSGIHPKDQLVWFLEVSPAVMALAILAVSFK
KFRFSNLVYFLILVHSIVLMIGGHWTYAEVPFFNWLRDIGIFSRNNYDKVGHFMQGFVPVLVAREVIIRKDIVNGGRWTN
FFSIAVVLAASACYEFIEWWISLLSGSRGDAFLGTQGYTWDTQSDMFFCLIGAVAAIMTLARIHDRMIRDSQHS
>Mature_234_residues
MFCYLPESRPPDIRKNEISTEITCREKRPMLKQNRILILYIIIFFLALILSGIHPKDQLVWFLEVSPAVMALAILAVSFK
KFRFSNLVYFLILVHSIVLMIGGHWTYAEVPFFNWLRDIGIFSRNNYDKVGHFMQGFVPVLVAREVIIRKDIVNGGRWTN
FFSIAVVLAASACYEFIEWWISLLSGSRGDAFLGTQGYTWDTQSDMFFCLIGAVAAIMTLARIHDRMIRDSQHS

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=205, Percent_Identity=43.9024390243902, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 26996; Mature: 26996

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFCYLPESRPPDIRKNEISTEITCREKRPMLKQNRILILYIIIFFLALILSGIHPKDQLV
CEEECCCCCCCCCCCCCCCCCEEEHHCCCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHEE
WFLEVSPAVMALAILAVSFKKFRFSNLVYFLILVHSIVLMIGGHWTYAEVPFFNWLRDIG
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHH
IFSRNNYDKVGHFMQGFVPVLVAREVIIRKDIVNGGRWTNFFSIAVVLAASACYEFIEWW
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ISLLSGSRGDAFLGTQGYTWDTQSDMFFCLIGAVAAIMTLARIHDRMIRDSQHS
HHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFCYLPESRPPDIRKNEISTEITCREKRPMLKQNRILILYIIIFFLALILSGIHPKDQLV
CEEECCCCCCCCCCCCCCCCCEEEHHCCCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHEE
WFLEVSPAVMALAILAVSFKKFRFSNLVYFLILVHSIVLMIGGHWTYAEVPFFNWLRDIG
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHH
IFSRNNYDKVGHFMQGFVPVLVAREVIIRKDIVNGGRWTNFFSIAVVLAASACYEFIEWW
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ISLLSGSRGDAFLGTQGYTWDTQSDMFFCLIGAVAAIMTLARIHDRMIRDSQHS
HHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]