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The map label for this gene is yciO [C]

Identifier: 85859579

GI number: 85859579

Start: 1810693

End: 1811301

Strand: Direct

Name: yciO [C]

Synonym: SYN_02195

Alternate gene names: 85859579

Gene position: 1810693-1811301 (Clockwise)

Preceding gene: 85859578

Following gene: 85859580

Centisome position: 56.95

GC content: 45.16

Gene sequence:

>609_bases
ATGCTGTTATCGATAAACACTCAGAACCCTCAGACAAGACTTATCAAGAAGGTTGCCGAAATTCTGCGTGACGGAGGAAT
AGTTATCTATCCAACTGATACGGTATATGGCCTTGGATGCAATCTTTTCAACAAAAAAGGCATCGAGAAGATTTACGAAA
TCAAGAAAAGAAACAAAAAGCAGCCCCTCAGCTTTATCTGCGCCGACCTTAAGGATATCAGCAAATATGCCCAGGTAACC
GATTTCGGTTACAGGATAATGAAGCGTCATCTTCCGGGCCCTTACACTTTCATTCTTCAAGCCTCGAGACTCGTCCCGAA
GATCATTCTTCCCAAAAGACAGACAACTGGGATTCGTGTACCGGACAACAGGATCTGCATGGCTCTGGTTGCTGAACTGG
GCCAACCCATCATCAGCACCAGCGTGAAGGCGGCTGATGATCGATATCTGAATGATCCGGAAGAGATTGAAAGTATATTC
AAGCATCACGTTGATGTCATTATCAATGGGGGCATCATTGCAGCTGAACCTTCCACCATCGTCAGCCTGATCGATGATAC
CGTGGAAGTTTTGAGAATCGGCAAAGGAGATGCTTCGGAATTTATATAG

Upstream 100 bases:

>100_bases
ACACCATTCTCATTAACAAGTATATTGATAAGGTTATGGTTTTATGTTATCAATATAAAGTTAATAGATTTATAGATGTG
AAAACGAAAGAACATCCTCC

Downstream 100 bases:

>100_bases
ACGGATAGGCCCGCCACTGGACAAGTCTTATTCTATTCTTACAGGATGGGTCTGATAAAGATATTAAAGATGTCATAAGG
GAAGGTCGAGGAAAAAAACG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MLLSINTQNPQTRLIKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKKQPLSFICADLKDISKYAQVT
DFGYRIMKRHLPGPYTFILQASRLVPKIILPKRQTTGIRVPDNRICMALVAELGQPIISTSVKAADDRYLNDPEEIESIF
KHHVDVIINGGIIAAEPSTIVSLIDDTVEVLRIGKGDASEFI

Sequences:

>Translated_202_residues
MLLSINTQNPQTRLIKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKKQPLSFICADLKDISKYAQVT
DFGYRIMKRHLPGPYTFILQASRLVPKIILPKRQTTGIRVPDNRICMALVAELGQPIISTSVKAADDRYLNDPEEIESIF
KHHVDVIINGGIIAAEPSTIVSLIDDTVEVLRIGKGDASEFI
>Mature_202_residues
MLLSINTQNPQTRLIKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKKQPLSFICADLKDISKYAQVT
DFGYRIMKRHLPGPYTFILQASRLVPKIILPKRQTTGIRVPDNRICMALVAELGQPIISTSVKAADDRYLNDPEEIESIF
KHHVDVIINGGIIAAEPSTIVSLIDDTVEVLRIGKGDASEFI

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=163, Percent_Identity=27.6073619631902, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI87081864, Length=203, Percent_Identity=40.8866995073892, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI2367210, Length=139, Percent_Identity=26.6187050359712, Blast_Score=73, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17537239, Length=204, Percent_Identity=27.9411764705882, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI78707274, Length=182, Percent_Identity=27.4725274725275, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22608; Mature: 22608

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSINTQNPQTRLIKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKK
CEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHCCCC
QPLSFICADLKDISKYAQVTDFGYRIMKRHLPGPYTFILQASRLVPKIILPKRQTTGIRV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHCCHHHCCCCCCCCEEC
PDNRICMALVAELGQPIISTSVKAADDRYLNDPEEIESIFKHHVDVIINGGIIAAEPSTI
CCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEECCEEEECHHHH
VSLIDDTVEVLRIGKGDASEFI
HHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLLSINTQNPQTRLIKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKK
CEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHCCCC
QPLSFICADLKDISKYAQVTDFGYRIMKRHLPGPYTFILQASRLVPKIILPKRQTTGIRV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHCCHHHCCCCCCCCEEC
PDNRICMALVAELGQPIISTSVKAADDRYLNDPEEIESIFKHHVDVIINGGIIAAEPSTI
CCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEECCEEEECHHHH
VSLIDDTVEVLRIGKGDASEFI
HHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]