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The map label for this gene is 85859543

Identifier: 85859543

GI number: 85859543

Start: 1766561

End: 1767922

Strand: Direct

Name: 85859543

Synonym: SYN_01886

Alternate gene names: NA

Gene position: 1766561-1767922 (Clockwise)

Preceding gene: 85859542

Following gene: 85859544

Centisome position: 55.56

GC content: 58.15

Gene sequence:

>1362_bases
ATGATTGCTCGGTTCCTCAAGAGTTCCTGCGGGAAGGGCGACCGAAAAACTTCCCGAACGATTCTCGGCGTCGGACACGG
GATGTCGGATCCAGACATGTCCATGCATATCGCCGTCTCCGATTCATCCCGGAAGGGGCATTTCTGGTGTTTCGGAACCA
CCCGGGTGGGGAAGACCCGGATTATGGAGAACATGGTCGAGCAGGACATCCGCAAAGGTTACAGCGTCGTTGTCATCGAC
CCAAAGGGGGATATCGATCTCTTCTCCAAGATCGTGCAGGTCGCCTTTGAGGAGGGCCGGGACCGTGAGCTCATCCTCGT
CACGCCCATCTACCCGCACCTGAGCGCCGTGATAGATCCCCTGGCCTATTACTACATGCCGGAGGAGTTGGTGGGGCACA
TCGTCTCCGGGGTAGAGGTGGGGAAGGAGCGGTTCTTCTTCAACGTCGCCTATGAGATCAGTCTCGTGATCGTCCAGGCG
CTCATCATGCTTGCCGCCTGGGAGGGGAAGGCCAAGAGCTTCAACCTAAACGACGTCAAGAACAAGATGTCGCGGGAGGA
GCTCGAAAAGCTCAAGGGACAGATCGACTGCGTAGACACCGAGGAGGCGAAGCAGCTCTCCTCGGACATCCAGAAGATCC
TGAACTCGCCTCAGGACTATTACGGGAAGGTTTCCTCGTCTCTCCGGGTCGCCCTGATGGAGCTCACGAGCGGGAACATC
GGGAAGGTCGTGGGAAAGGCCGACGAGAACCGGTTCATCGACCGCCTGGAAAAGGGGAAGCCGGTAATCATGGTGGTCCA
CCTCGGCTCCCTGATCACTCGCAAGGCGGCGTTCACCCTGGGAAAGGTGGTCATCTCGATGGTCCAGAGCTTCGTTGGAC
GGGTCTTCTCGTCGGGAAGGCGGGTAACCCCACCACTTTGCCTTTACATCGACGAGTGTCAGAATGTCCTCTACTACGGG
ATCGAGGATCTCTTCGCCAAGGCTGGCGGCGCCGACGTGTGGGTCCACGGCTTCGCCCAATCCGTCTCCCAGCTCTACGC
CATGATCGGAAAGGATTACGGGAACGCCATCCTCGACAACACCAACACCAAGCTCTTCATGCGGGTCCCTGACACGGATA
CGGCCTCGTACGTAGCCAAGCACTTCGGGGAGTTCCGGCGCTATTCCCCGATTCTCAACGTGGACGGCGGGGTGTCGGTC
CGGGAAGAGGAGGACACGATCCTGAAGCCCTCCGACATTCTTGAACTCGCAGAGAGAGAGTTCTATCTCATGACTTATTC
CGGCCTGTTCCGCGGGCGGAGTCTCGATGTCTCCACACTTTATCTGGAAATCAAGTTCCCAGACCTCACGGCTGAGTCAT
GA

Upstream 100 bases:

>100_bases
GGGCTTACTCGGAAGTCGTCTCCACTGCGCCGGTTTCTCGTGATGCCATAAAGAGCGTTTCGGACGAATTGAAAGAGTAC
ATCCGGGTGGTGAGGAAATC

Downstream 100 bases:

>100_bases
AAGCGATCACGACGATCCTTTTCATCCTCGCGGTCGGCTGCCTCGCGATTTATGCCATATGCATATACATTTCCGCCTTG
TGTAAATCACGAAATCCCGG

Product: DNA transfer in the process of conjugation and F pilus assembly protein

Products: NA

Alternate protein names: TraG Family Protein; Type IV Conjugative Transfer System Protein TraD; Conjugative Coupling Factor TraD; TraG-Family Protein; Conjugal Transfer Protein TraD

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MIARFLKSSCGKGDRKTSRTILGVGHGMSDPDMSMHIAVSDSSRKGHFWCFGTTRVGKTRIMENMVEQDIRKGYSVVVID
PKGDIDLFSKIVQVAFEEGRDRELILVTPIYPHLSAVIDPLAYYYMPEELVGHIVSGVEVGKERFFFNVAYEISLVIVQA
LIMLAAWEGKAKSFNLNDVKNKMSREELEKLKGQIDCVDTEEAKQLSSDIQKILNSPQDYYGKVSSSLRVALMELTSGNI
GKVVGKADENRFIDRLEKGKPVIMVVHLGSLITRKAAFTLGKVVISMVQSFVGRVFSSGRRVTPPLCLYIDECQNVLYYG
IEDLFAKAGGADVWVHGFAQSVSQLYAMIGKDYGNAILDNTNTKLFMRVPDTDTASYVAKHFGEFRRYSPILNVDGGVSV
REEEDTILKPSDILELAEREFYLMTYSGLFRGRSLDVSTLYLEIKFPDLTAES

Sequences:

>Translated_453_residues
MIARFLKSSCGKGDRKTSRTILGVGHGMSDPDMSMHIAVSDSSRKGHFWCFGTTRVGKTRIMENMVEQDIRKGYSVVVID
PKGDIDLFSKIVQVAFEEGRDRELILVTPIYPHLSAVIDPLAYYYMPEELVGHIVSGVEVGKERFFFNVAYEISLVIVQA
LIMLAAWEGKAKSFNLNDVKNKMSREELEKLKGQIDCVDTEEAKQLSSDIQKILNSPQDYYGKVSSSLRVALMELTSGNI
GKVVGKADENRFIDRLEKGKPVIMVVHLGSLITRKAAFTLGKVVISMVQSFVGRVFSSGRRVTPPLCLYIDECQNVLYYG
IEDLFAKAGGADVWVHGFAQSVSQLYAMIGKDYGNAILDNTNTKLFMRVPDTDTASYVAKHFGEFRRYSPILNVDGGVSV
REEEDTILKPSDILELAEREFYLMTYSGLFRGRSLDVSTLYLEIKFPDLTAES
>Mature_453_residues
MIARFLKSSCGKGDRKTSRTILGVGHGMSDPDMSMHIAVSDSSRKGHFWCFGTTRVGKTRIMENMVEQDIRKGYSVVVID
PKGDIDLFSKIVQVAFEEGRDRELILVTPIYPHLSAVIDPLAYYYMPEELVGHIVSGVEVGKERFFFNVAYEISLVIVQA
LIMLAAWEGKAKSFNLNDVKNKMSREELEKLKGQIDCVDTEEAKQLSSDIQKILNSPQDYYGKVSSSLRVALMELTSGNI
GKVVGKADENRFIDRLEKGKPVIMVVHLGSLITRKAAFTLGKVVISMVQSFVGRVFSSGRRVTPPLCLYIDECQNVLYYG
IEDLFAKAGGADVWVHGFAQSVSQLYAMIGKDYGNAILDNTNTKLFMRVPDTDTASYVAKHFGEFRRYSPILNVDGGVSV
REEEDTILKPSDILELAEREFYLMTYSGLFRGRSLDVSTLYLEIKFPDLTAES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50670; Mature: 50670

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARFLKSSCGKGDRKTSRTILGVGHGMSDPDMSMHIAVSDSSRKGHFWCFGTTRVGKTR
CHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCHHHH
IMENMVEQDIRKGYSVVVIDPKGDIDLFSKIVQVAFEEGRDRELILVTPIYPHLSAVIDP
HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
LAYYYMPEELVGHIVSGVEVGKERFFFNVAYEISLVIVQALIMLAAWEGKAKSFNLNDVK
HHHHCCCHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
NKMSREELEKLKGQIDCVDTEEAKQLSSDIQKILNSPQDYYGKVSSSLRVALMELTSGNI
HHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCC
GKVVGKADENRFIDRLEKGKPVIMVVHLGSLITRKAAFTLGKVVISMVQSFVGRVFSSGR
HHHCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RVTPPLCLYIDECQNVLYYGIEDLFAKAGGADVWVHGFAQSVSQLYAMIGKDYGNAILDN
CCCCHHEEEEHHHHHHHHHCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEECC
TNTKLFMRVPDTDTASYVAKHFGEFRRYSPILNVDGGVSVREEEDTILKPSDILELAERE
CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCEEECCCCCCCCHHHHHHHHHCC
FYLMTYSGLFRGRSLDVSTLYLEIKFPDLTAES
EEEEEEHHHHCCCCCEEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MIARFLKSSCGKGDRKTSRTILGVGHGMSDPDMSMHIAVSDSSRKGHFWCFGTTRVGKTR
CHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCHHHH
IMENMVEQDIRKGYSVVVIDPKGDIDLFSKIVQVAFEEGRDRELILVTPIYPHLSAVIDP
HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
LAYYYMPEELVGHIVSGVEVGKERFFFNVAYEISLVIVQALIMLAAWEGKAKSFNLNDVK
HHHHCCCHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
NKMSREELEKLKGQIDCVDTEEAKQLSSDIQKILNSPQDYYGKVSSSLRVALMELTSGNI
HHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCC
GKVVGKADENRFIDRLEKGKPVIMVVHLGSLITRKAAFTLGKVVISMVQSFVGRVFSSGR
HHHCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RVTPPLCLYIDECQNVLYYGIEDLFAKAGGADVWVHGFAQSVSQLYAMIGKDYGNAILDN
CCCCHHEEEEHHHHHHHHHCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEECC
TNTKLFMRVPDTDTASYVAKHFGEFRRYSPILNVDGGVSVREEEDTILKPSDILELAERE
CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCEEECCCCCCCCHHHHHHHHHCC
FYLMTYSGLFRGRSLDVSTLYLEIKFPDLTAES
EEEEEEHHHHCCCCCEEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA