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The map label for this gene is 85859540

Identifier: 85859540

GI number: 85859540

Start: 1764942

End: 1765289

Strand: Direct

Name: 85859540

Synonym: SYN_01883

Alternate gene names: NA

Gene position: 1764942-1765289 (Clockwise)

Preceding gene: 85859537

Following gene: 85859541

Centisome position: 55.51

GC content: 58.33

Gene sequence:

>348_bases
ATGGAAGACAAGCGCGAAGAGCTGGGCAAGTGCCCGGAATGCGGGAAACCGGTCTACGAGGGAAAAAAGTCTTACTATTG
CTCGGGTTACAAGGAGGGATGCAAGTTCGTGCTGTGGAAGAACAGCCTCGACCGGCTCGGGCACGCCGACATCACCCCCG
CCCAGGCCAGGCAGTTGCTGAACAACGAGACAGTCGCCTTCACCGGTCTCAAGTCCAGGGCCGGCAACGAATTCGACGCC
GAGGGGAAACTCGCCAAAAACGAGACCTACGGATGGCAGATCGGCCTCATCTTCGGCGACGCCGGCAAAGAAAAACAACA
GCCCTCCGGCCGGGAAGAAAACGAATAA

Upstream 100 bases:

>100_bases
CAACCAAAAATCCCTGCATCGAAAACATTATATATTAAGGAGCGATCGCGGCGAAGCCGCGCATCGACTCGTCAAAACAC
AAGTAAATCAGGAGGTAGTC

Downstream 100 bases:

>100_bases
ACAAAAAAATCAATAAACGGCATTTTCAACAAACCAATAAACAAAAAAACGGTAACCGCGAGCCCGCCCCTGGGAATTCC
AATCATAGCGCCTCGGCAAG

Product: DNA topoisomerase III

Products: NA

Alternate protein names: DNA poisomerase I; DNA poisomerase III; DNA poisomerase Type IA Central Domain-Containing Protein; DNA poisomerase TopA; Type I poisomease

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MEDKREELGKCPECGKPVYEGKKSYYCSGYKEGCKFVLWKNSLDRLGHADITPAQARQLLNNETVAFTGLKSRAGNEFDA
EGKLAKNETYGWQIGLIFGDAGKEKQQPSGREENE

Sequences:

>Translated_115_residues
MEDKREELGKCPECGKPVYEGKKSYYCSGYKEGCKFVLWKNSLDRLGHADITPAQARQLLNNETVAFTGLKSRAGNEFDA
EGKLAKNETYGWQIGLIFGDAGKEKQQPSGREENE
>Mature_115_residues
MEDKREELGKCPECGKPVYEGKKSYYCSGYKEGCKFVLWKNSLDRLGHADITPAQARQLLNNETVAFTGLKSRAGNEFDA
EGKLAKNETYGWQIGLIFGDAGKEKQQPSGREENE

Specific function: Unknown

COG id: COG0550

COG function: function code L; Topoisomerase IA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 5.99.1.2

Molecular weight: Translated: 12882; Mature: 12882

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKREELGKCPECGKPVYEGKKSYYCSGYKEGCKFVLWKNSLDRLGHADITPAQARQLL
CCCCHHHHCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCHHHCCCCCCCHHHHHHHH
NNETVAFTGLKSRAGNEFDAEGKLAKNETYGWQIGLIFGDAGKEKQQPSGREENE
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEDKREELGKCPECGKPVYEGKKSYYCSGYKEGCKFVLWKNSLDRLGHADITPAQARQLL
CCCCHHHHCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCHHHCCCCCCCHHHHHHHH
NNETVAFTGLKSRAGNEFDAEGKLAKNETYGWQIGLIFGDAGKEKQQPSGREENE
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA