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The map label for this gene is psd

Identifier: 85859439

GI number: 85859439

Start: 1643873

End: 1644514

Strand: Direct

Name: psd

Synonym: SYN_00913

Alternate gene names: 85859439

Gene position: 1643873-1644514 (Clockwise)

Preceding gene: 85859438

Following gene: 85859440

Centisome position: 51.71

GC content: 46.11

Gene sequence:

>642_bases
ATGAAACATGACAGTTTCATAGCGCGTGAGGGCATTCCTTTTATTATCGCTTTCGGCCTGACCACCCTGCTTGCCGTTTT
TTTCCTGGAACAATCCTGGATTGCCGTCTTACCTCTAACCGCCACATTATTCACATGCTGGTTCTTCCGCAATCCGGAAA
GACATACGCCTGAGGGTGAAAAACTCATTGTTTCGCCTGCGGATGGAAAAGTGATCCGGATCGATGAAGACTTCCATCAT
GAAATGCTTTCTCAGCCCTGCAGCAAAGTCAGCATTTTTATGAATGTATTTAACGTTCATGTGAATCGGGTTCCTTATTC
CGGAAAAGTGACAAAAATCAGCTACAGCCCGGGGAGATTTCTTTCCGCCAACCTGGATAAGGCCTCGGAACAGAATGAAC
GGAATGCCATTCTGGTTCGAACCAGTGATGGAAAGGAAATTATGACCATCCAGATCGCGGGGTTGATCGCGAGAAGAATA
GTTTGCTGGGTAAGAGAGGAAGATGTTGTGAAAAGGGGTGAACGATTCGGGATGATCCGTTTCGGTTCAAGACTTGAAGT
TTTTATGCCGAAAGAAACGAAAATACTGGTTACTGTCGGAGAAAAAGTGAAAGCAGGCGAATCCCCTCTGGGGACGTTCT
AA

Upstream 100 bases:

>100_bases
AGAAATCATTGAAATATGTAGAAATCTCTTGAATTCATGAACCGTTTTCTCCGTATCCAGGCTCAAAATCTGATTATCTC
TCTTGCAGGATTCTTTCAAT

Downstream 100 bases:

>100_bases
TGAAGCAGGGGGACAAATTGGGCAGAGGCCGCATGAAAAAAGGGGTTTACCTCTTACCGAATCTTTTCACATCGGCTAAT
CTTTTTTTCGGATTTTATTC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKHDSFIAREGIPFIIAFGLTTLLAVFFLEQSWIAVLPLTATLFTCWFFRNPERHTPEGEKLIVSPADGKVIRIDEDFHH
EMLSQPCSKVSIFMNVFNVHVNRVPYSGKVTKISYSPGRFLSANLDKASEQNERNAILVRTSDGKEIMTIQIAGLIARRI
VCWVREEDVVKRGERFGMIRFGSRLEVFMPKETKILVTVGEKVKAGESPLGTF

Sequences:

>Translated_213_residues
MKHDSFIAREGIPFIIAFGLTTLLAVFFLEQSWIAVLPLTATLFTCWFFRNPERHTPEGEKLIVSPADGKVIRIDEDFHH
EMLSQPCSKVSIFMNVFNVHVNRVPYSGKVTKISYSPGRFLSANLDKASEQNERNAILVRTSDGKEIMTIQIAGLIARRI
VCWVREEDVVKRGERFGMIRFGSRLEVFMPKETKILVTVGEKVKAGESPLGTF
>Mature_213_residues
MKHDSFIAREGIPFIIAFGLTTLLAVFFLEQSWIAVLPLTATLFTCWFFRNPERHTPEGEKLIVSPADGKVIRIDEDFHH
EMLSQPCSKVSIFMNVFNVHVNRVPYSGKVTKISYSPGRFLSANLDKASEQNERNAILVRTSDGKEIMTIQIAGLIARRI
VCWVREEDVVKRGERFGMIRFGSRLEVFMPKETKILVTVGEKVKAGESPLGTF

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_SYNAS (Q2LTR6)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_461641.1
- STRING:   Q2LTR6
- GeneID:   3883147
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_00913
- NMPDR:   fig|56780.10.peg.1584
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   ESENNER
- ProtClustDB:   PRK05305
- BioCyc:   SACI56780:SYN_00913-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24147; Mature: 24147

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHDSFIAREGIPFIIAFGLTTLLAVFFLEQSWIAVLPLTATLFTCWFFRNPERHTPEGE
CCCCCCHHHCCCCEEEHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCCC
KLIVSPADGKVIRIDEDFHHEMLSQPCSKVSIFMNVFNVHVNRVPYSGKVTKISYSPGRF
EEEEECCCCCEEEECCHHHHHHHHCCHHHHHHHHHHHEEEEEECCCCCEEEEEEECCCCE
LSANLDKASEQNERNAILVRTSDGKEIMTIQIAGLIARRIVCWVREEDVVKRGERFGMIR
EECCCCCCCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHCCCHHHHHCCCCEEEEE
FGSRLEVFMPKETKILVTVGEKVKAGESPLGTF
ECCEEEEEECCCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKHDSFIAREGIPFIIAFGLTTLLAVFFLEQSWIAVLPLTATLFTCWFFRNPERHTPEGE
CCCCCCHHHCCCCEEEHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCCCC
KLIVSPADGKVIRIDEDFHHEMLSQPCSKVSIFMNVFNVHVNRVPYSGKVTKISYSPGRF
EEEEECCCCCEEEECCHHHHHHHHCCHHHHHHHHHHHEEEEEECCCCCEEEEEEECCCCE
LSANLDKASEQNERNAILVRTSDGKEIMTIQIAGLIARRIVCWVREEDVVKRGERFGMIR
EECCCCCCCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHCCCHHHHHCCCCEEEEE
FGSRLEVFMPKETKILVTVGEKVKAGESPLGTF
ECCEEEEEECCCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA