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The map label for this gene is rnk [H]

Identifier: 85859428

GI number: 85859428

Start: 1635430

End: 1635834

Strand: Direct

Name: rnk [H]

Synonym: SYN_01033

Alternate gene names: 85859428

Gene position: 1635430-1635834 (Clockwise)

Preceding gene: 85859427

Following gene: 85859429

Centisome position: 51.44

GC content: 51.11

Gene sequence:

>405_bases
ATGAACAAACGTCGAATTTATGTCACAGAACAGGATATGGAGAGACTGGAGGATCTCCTGGAAACATCGAAGAAATCAGA
GTATGCGCGGAGTCTGGAAGCTGAGCTGGTAAATGCCGTCGTGGTGCCTTCGGAAGAGATGCCTCCAGATGTCGTGACTA
TGAACTCCTGTGTCTGTTTTGAAGATCTGACGACAGGAAACAGGGAAACCATAACACTGGTTTATCCTGGTCAGGCCAAT
ATGGCTTCCGGGAGGGTTTCCGTGCTTGCGCCCGTCGGTTCGGCTTTGATCGGGTTATCGGTCGGCCAGACAATTGAATG
GCCCATGCCGAACGGCCGTAAACGACGTCTGCGCATTGTGGAAGTGCTTTATCAACCTGAAGCGGCAGGGGATTTCCATC
TATAG

Upstream 100 bases:

>100_bases
TGCCTTTTTTTAGCTTTTATCCACCCATGGCCGACGTCATCTGAAGAATCGCAGTTGGGATAAATTAGATATTTTCTTAC
AGTATCAGGAGCGTGTAATT

Downstream 100 bases:

>100_bases
CGGAAGCTCCTTCCGTGTTAACCCGCATGGCAATTCCAGTTGACAAATTCCATCCGTGGAATCTTACTTCGGCAATGTCT
TTCTGTTTTATCTTGCGTAT

Product: transcription elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MNKRRIYVTEQDMERLEDLLETSKKSEYARSLEAELVNAVVVPSEEMPPDVVTMNSCVCFEDLTTGNRETITLVYPGQAN
MASGRVSVLAPVGSALIGLSVGQTIEWPMPNGRKRRLRIVEVLYQPEAAGDFHL

Sequences:

>Translated_134_residues
MNKRRIYVTEQDMERLEDLLETSKKSEYARSLEAELVNAVVVPSEEMPPDVVTMNSCVCFEDLTTGNRETITLVYPGQAN
MASGRVSVLAPVGSALIGLSVGQTIEWPMPNGRKRRLRIVEVLYQPEAAGDFHL
>Mature_134_residues
MNKRRIYVTEQDMERLEDLLETSKKSEYARSLEAELVNAVVVPSEEMPPDVVTMNSCVCFEDLTTGNRETITLVYPGQAN
MASGRVSVLAPVGSALIGLSVGQTIEWPMPNGRKRRLRIVEVLYQPEAAGDFHL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=136, Percent_Identity=44.8529411764706, Blast_Score=110, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14926; Mature: 14926

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRRIYVTEQDMERLEDLLETSKKSEYARSLEAELVNAVVVPSEEMPPDVVTMNSCVCF
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEECCEEEE
EDLTTGNRETITLVYPGQANMASGRVSVLAPVGSALIGLSVGQTIEWPMPNGRKRRLRIV
ECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHCCCCCEEECCCCCCCHHHHEEE
EVLYQPEAAGDFHL
HEEECCCCCCCCCC
>Mature Secondary Structure
MNKRRIYVTEQDMERLEDLLETSKKSEYARSLEAELVNAVVVPSEEMPPDVVTMNSCVCF
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEECCEEEE
EDLTTGNRETITLVYPGQANMASGRVSVLAPVGSALIGLSVGQTIEWPMPNGRKRRLRIV
ECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHCCCCCEEECCCCCCCHHHHEEE
EVLYQPEAAGDFHL
HEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]