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The map label for this gene is ybbK [C]

Identifier: 85859398

GI number: 85859398

Start: 1605157

End: 1605906

Strand: Direct

Name: ybbK [C]

Synonym: SYN_02180

Alternate gene names: 85859398

Gene position: 1605157-1605906 (Clockwise)

Preceding gene: 85859397

Following gene: 85859399

Centisome position: 50.49

GC content: 50.0

Gene sequence:

>750_bases
ATGTATACGCTTGTTGTTCTGGTCGTTCTGGTCGTCATGTTTCTCGCGTCGGCTATACGGGTTCTCAATGAATACGAACG
TGGTGTAATTTTTCGACTGGGTCGGGTGATTGATGTAAAAGGGCCGGGCCTGATTATCCTGATTCCCGTTGTGGATCGGA
TGATCAAGGTCGACATGCGGACAATCACCATGGATGTACCTCCTCAGGACGTGATCACACGCGACAACGTTTCGATCAAG
GTTAATGCCGTTGTTTATTTCCGGGTGATGGATGCAAACTCGGCCGTTATTCAAGTGGAGAACTTTCTTTATGCCACCTC
GCAGCTTGCCCAGACCACCCTCCGCAGTGTATGCGGACAGGTTGAACTGGACGAAATTCTATCTGAAAGAGAAAAAATCA
ATCTTCAACTACAGGAAATTCTTGATCGGAGTACAGATCCCTGGGGAATCAAGGTTTCTCTTGTCGAGGTGAAGCATATC
GATCTTCCTGAAGAGATGAAACGGGCAATGGCCAAACAGGCGGAAGCGGAACGGGAACGGCGGGCAAAGATCATAGCGGC
GGAAGGTGAATATCAGGCGGCGCAGAAGCTCATCGAGGCGGCAGCGCTGATGAGCACCCAGCCCATATCTGTGCAGCTCC
GTTATCTGCAGACTCTGAACCAGATCGCTGCAGAAAATAATTCGACAACGGTTTTCCCCGTTCCCATCGACCTCTTCGGT
CCCTTCCTGAAAGGAAAAGACAAAGAATGA

Upstream 100 bases:

>100_bases
ATCCGATTGAAAAAGGTGAAAAAGTCAGAGTTGAGCGCGTTGAGGGGATGAAAATAAAGGTGACGAAAAAATAATTTGTA
TTAACAGGGGAGGATGGATT

Downstream 100 bases:

>100_bases
CTCCGAAGGGAAAGGTAAAAGCTGCATAGGATAGGGAAAAAAAATTGAAAGACAAAAGTGCCATTTTGACAGGGGGGTTG
GTTCTGATTGCCCTCGGTAT

Product: membrane protease subunit, stomatin/prohibitin -like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MYTLVVLVVLVVMFLASAIRVLNEYERGVIFRLGRVIDVKGPGLIILIPVVDRMIKVDMRTITMDVPPQDVITRDNVSIK
VNAVVYFRVMDANSAVIQVENFLYATSQLAQTTLRSVCGQVELDEILSEREKINLQLQEILDRSTDPWGIKVSLVEVKHI
DLPEEMKRAMAKQAEAERERRAKIIAAEGEYQAAQKLIEAAALMSTQPISVQLRYLQTLNQIAAENNSTTVFPVPIDLFG
PFLKGKDKE

Sequences:

>Translated_249_residues
MYTLVVLVVLVVMFLASAIRVLNEYERGVIFRLGRVIDVKGPGLIILIPVVDRMIKVDMRTITMDVPPQDVITRDNVSIK
VNAVVYFRVMDANSAVIQVENFLYATSQLAQTTLRSVCGQVELDEILSEREKINLQLQEILDRSTDPWGIKVSLVEVKHI
DLPEEMKRAMAKQAEAERERRAKIIAAEGEYQAAQKLIEAAALMSTQPISVQLRYLQTLNQIAAENNSTTVFPVPIDLFG
PFLKGKDKE
>Mature_249_residues
MYTLVVLVVLVVMFLASAIRVLNEYERGVIFRLGRVIDVKGPGLIILIPVVDRMIKVDMRTITMDVPPQDVITRDNVSIK
VNAVVYFRVMDANSAVIQVENFLYATSQLAQTTLRSVCGQVELDEILSEREKINLQLQEILDRSTDPWGIKVSLVEVKHI
DLPEEMKRAMAKQAEAERERRAKIIAAEGEYQAAQKLIEAAALMSTQPISVQLRYLQTLNQIAAENNSTTVFPVPIDLFG
PFLKGKDKE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=251, Percent_Identity=49.402390438247, Blast_Score=227, Evalue=6e-60,
Organism=Homo sapiens, GI221316744, Length=243, Percent_Identity=45.679012345679, Blast_Score=215, Evalue=3e-56,
Organism=Homo sapiens, GI21686995, Length=243, Percent_Identity=45.679012345679, Blast_Score=215, Evalue=3e-56,
Organism=Homo sapiens, GI7657615, Length=244, Percent_Identity=36.4754098360656, Blast_Score=156, Evalue=1e-38,
Organism=Homo sapiens, GI7305503, Length=203, Percent_Identity=36.9458128078818, Blast_Score=139, Evalue=3e-33,
Organism=Homo sapiens, GI20149563, Length=160, Percent_Identity=33.125, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI38016907, Length=67, Percent_Identity=50.7462686567164, Blast_Score=71, Evalue=8e-13,
Organism=Escherichia coli, GI1786697, Length=189, Percent_Identity=35.978835978836, Blast_Score=139, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17570459, Length=250, Percent_Identity=47.6, Blast_Score=228, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17569493, Length=244, Percent_Identity=47.1311475409836, Blast_Score=228, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI193209764, Length=240, Percent_Identity=47.5, Blast_Score=227, Evalue=4e-60,
Organism=Caenorhabditis elegans, GI71987612, Length=250, Percent_Identity=48.8, Blast_Score=226, Evalue=8e-60,
Organism=Caenorhabditis elegans, GI25153583, Length=250, Percent_Identity=48.8, Blast_Score=226, Evalue=1e-59,
Organism=Caenorhabditis elegans, GI71987621, Length=250, Percent_Identity=48.8, Blast_Score=224, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI17570161, Length=248, Percent_Identity=47.5806451612903, Blast_Score=221, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI193210507, Length=248, Percent_Identity=47.5806451612903, Blast_Score=221, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI17569499, Length=243, Percent_Identity=47.3251028806584, Blast_Score=220, Evalue=5e-58,
Organism=Caenorhabditis elegans, GI17569497, Length=238, Percent_Identity=42.0168067226891, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI71989948, Length=229, Percent_Identity=47.1615720524017, Blast_Score=196, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI32566490, Length=210, Percent_Identity=50, Blast_Score=195, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=48.8888888888889, Blast_Score=156, Evalue=8e-39,
Organism=Caenorhabditis elegans, GI32564147, Length=180, Percent_Identity=36.1111111111111, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71989963, Length=121, Percent_Identity=47.9338842975207, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17542664, Length=165, Percent_Identity=26.0606060606061, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI45556022, Length=247, Percent_Identity=49.3927125506073, Blast_Score=230, Evalue=6e-61,
Organism=Drosophila melanogaster, GI24657857, Length=246, Percent_Identity=52.0325203252033, Blast_Score=227, Evalue=6e-60,
Organism=Drosophila melanogaster, GI281365664, Length=243, Percent_Identity=52.6748971193416, Blast_Score=226, Evalue=9e-60,
Organism=Drosophila melanogaster, GI62484448, Length=243, Percent_Identity=52.6748971193416, Blast_Score=226, Evalue=1e-59,
Organism=Drosophila melanogaster, GI62484274, Length=250, Percent_Identity=51.2, Blast_Score=226, Evalue=2e-59,
Organism=Drosophila melanogaster, GI18860517, Length=244, Percent_Identity=45.9016393442623, Blast_Score=216, Evalue=8e-57,
Organism=Drosophila melanogaster, GI28573263, Length=244, Percent_Identity=43.4426229508197, Blast_Score=209, Evalue=1e-54,
Organism=Drosophila melanogaster, GI21356845, Length=244, Percent_Identity=39.344262295082, Blast_Score=205, Evalue=2e-53,
Organism=Drosophila melanogaster, GI281361631, Length=239, Percent_Identity=40.1673640167364, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI281361633, Length=239, Percent_Identity=40.1673640167364, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=41.6216216216216, Blast_Score=152, Evalue=2e-37,
Organism=Drosophila melanogaster, GI45550506, Length=185, Percent_Identity=37.2972972972973, Blast_Score=132, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28011; Mature: 28011

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTLVVLVVLVVMFLASAIRVLNEYERGVIFRLGRVIDVKGPGLIILIPVVDRMIKVDMR
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECEEEEECCCCEEEEHHHHHHHHHHHHE
TITMDVPPQDVITRDNVSIKVNAVVYFRVMDANSAVIQVENFLYATSQLAQTTLRSVCGQ
EEEECCCCHHHEECCCCEEEEEEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
VELDEILSEREKINLQLQEILDRSTDPWGIKVSLVEVKHIDLPEEMKRAMAKQAEAERER
CCHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
RAKIIAAEGEYQAAQKLIEAAALMSTQPISVQLRYLQTLNQIAAENNSTTVFPVPIDLFG
HHEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHC
PFLKGKDKE
HHCCCCCCC
>Mature Secondary Structure
MYTLVVLVVLVVMFLASAIRVLNEYERGVIFRLGRVIDVKGPGLIILIPVVDRMIKVDMR
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECEEEEECCCCEEEEHHHHHHHHHHHHE
TITMDVPPQDVITRDNVSIKVNAVVYFRVMDANSAVIQVENFLYATSQLAQTTLRSVCGQ
EEEECCCCHHHEECCCCEEEEEEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
VELDEILSEREKINLQLQEILDRSTDPWGIKVSLVEVKHIDLPEEMKRAMAKQAEAERER
CCHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
RAKIIAAEGEYQAAQKLIEAAALMSTQPISVQLRYLQTLNQIAAENNSTTVFPVPIDLFG
HHEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHC
PFLKGKDKE
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]