| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
Click here to switch to the map view.
The map label for this gene is cheB2
Identifier: 85859039
GI number: 85859039
Start: 1214354
End: 1215385
Strand: Direct
Name: cheB2
Synonym: SYN_00964
Alternate gene names: 85859039
Gene position: 1214354-1215385 (Clockwise)
Preceding gene: 85859038
Following gene: 85859040
Centisome position: 38.2
GC content: 48.64
Gene sequence:
>1032_bases ATGAGCAAGATAAAGGTCTTGGTTGTTGATGATTCGGCGATTGTCAGAAAAATTTTTACCGAAGAGCTCTCGAAATATCC AGATATAGAAGTTGTCGGGTCGGCCCCGGATCCTTTTGTGGCCCGCGACAAAATTGTCCATCTGAAACCGGATGTGATTA CGCTGGACATAGAAATGCCAAGGATGGATGGTTTGACCTTCCTGAAAAAGCTGATGAGACATTACCCTCTTCCCGCAATT ATCGTCAGTTCCCTGACCCCCAAAGGGGGGAAACTGACCCTTGAGGCTATGGATATAGGAGCGGTCGATGCTATCGCTAA GCCAGGAAGTTCATACTCTGTAGGTGATATGAGCGGACAGTTGGTTGAAAAGATCCGAGCGGCATCAGGGGCAAGAGTTG TGAGGAAGAGCACACAGGAAATGTTTCAGCCCGGCTCACGTCTTTCCATAAGATCTCTTGCTGAAACTTCGAATAAAGTT ATTGCCATTGGCGCATCGACAGGCGGGACGGAAGCTCTGAAAAACGTGCTTTCCAGGATGCCTCCCGATTCACCTGGAAT TCTTGTAGTGCAGCATATGCCGGCGAACTTCACCACGGCCTTCGCGGAACGCTTGAACAGTCTTTGTCAAATTGGCGTTA AAGAAGCCGCGGATAACGATTCGGTAACTCCCGGAACAGCGCTTATCGCACCGGGAAACTATCACATGATTCTACGGCGG AGTGGCGCACGATATTATGTTCAAATAAAAATGGGTCCCATGGTGCATCATCAAAGGCCGGCTGTGGACGTTCTTTTTAA ATCAACGGCTAAATATGCAGGGGCTAATGCCATCGGTGTCATTTTGACCGGGATGGGCGCCGATGGTGCTGCGGGACTTC TGGAAATGAAGCAGATGGGAGCAGGCACGATCGCGCAGAATGAAAAATCCTGTATTGTTTATGGAATGCCCAAGGAAGCC GTGAAAATAGGGGCGGTTGATAAAATCGTTCATCTTGATTCGATTGCTGATGAAATTGTGAGGATGGTGTAG
Upstream 100 bases:
>100_bases AGATTGTCTACAATACCTTTCAGAATGAAGCCCTGATCTACAAGGTCAATACGCTTCGAAACAGTGACTGGTATCCATAT GATGGGCAAGGCAGACAGGC
Downstream 100 bases:
>100_bases CGATGAATTATGAAACCCTGTTGAAGTCAATTGATTGCATGGCGTCAGATTTTCTCTTTCTTGACAGCGGAGATATGGAT GTGCCGACGACAGGAAAATT
Product: protein-glutamate methylesterase CheB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MSKIKVLVVDDSAIVRKIFTEELSKYPDIEVVGSAPDPFVARDKIVHLKPDVITLDIEMPRMDGLTFLKKLMRHYPLPAI IVSSLTPKGGKLTLEAMDIGAVDAIAKPGSSYSVGDMSGQLVEKIRAASGARVVRKSTQEMFQPGSRLSIRSLAETSNKV IAIGASTGGTEALKNVLSRMPPDSPGILVVQHMPANFTTAFAERLNSLCQIGVKEAADNDSVTPGTALIAPGNYHMILRR SGARYYVQIKMGPMVHHQRPAVDVLFKSTAKYAGANAIGVILTGMGADGAAGLLEMKQMGAGTIAQNEKSCIVYGMPKEA VKIGAVDKIVHLDSIADEIVRMV
Sequences:
>Translated_343_residues MSKIKVLVVDDSAIVRKIFTEELSKYPDIEVVGSAPDPFVARDKIVHLKPDVITLDIEMPRMDGLTFLKKLMRHYPLPAI IVSSLTPKGGKLTLEAMDIGAVDAIAKPGSSYSVGDMSGQLVEKIRAASGARVVRKSTQEMFQPGSRLSIRSLAETSNKV IAIGASTGGTEALKNVLSRMPPDSPGILVVQHMPANFTTAFAERLNSLCQIGVKEAADNDSVTPGTALIAPGNYHMILRR SGARYYVQIKMGPMVHHQRPAVDVLFKSTAKYAGANAIGVILTGMGADGAAGLLEMKQMGAGTIAQNEKSCIVYGMPKEA VKIGAVDKIVHLDSIADEIVRMV >Mature_342_residues SKIKVLVVDDSAIVRKIFTEELSKYPDIEVVGSAPDPFVARDKIVHLKPDVITLDIEMPRMDGLTFLKKLMRHYPLPAII VSSLTPKGGKLTLEAMDIGAVDAIAKPGSSYSVGDMSGQLVEKIRAASGARVVRKSTQEMFQPGSRLSIRSLAETSNKVI AIGASTGGTEALKNVLSRMPPDSPGILVVQHMPANFTTAFAERLNSLCQIGVKEAADNDSVTPGTALIAPGNYHMILRRS GARYYVQIKMGPMVHHQRPAVDVLFKSTAKYAGANAIGVILTGMGADGAAGLLEMKQMGAGTIAQNEKSCIVYGMPKEAV KIGAVDKIVHLDSIADEIVRMV
Specific function: Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR
COG id: COG2201
COG function: function code NT; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain
Homologues:
Organism=Escherichia coli, GI1788192, Length=345, Percent_Identity=53.3333333333333, Blast_Score=364, Evalue=1e-102,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): CHEB2_SYNAS (Q2LSL3)
Other databases:
- EMBL: CP000252 - RefSeq: YP_461241.1 - ProteinModelPortal: Q2LSL3 - SMR: Q2LSL3 - STRING: Q2LSL3 - GeneID: 3882494 - GenomeReviews: CP000252_GR - KEGG: sat:SYN_00964 - NMPDR: fig|56780.10.peg.1175 - eggNOG: COG2201 - HOGENOM: HBG705324 - OMA: DIPARMM - PhylomeDB: Q2LSL3 - ProtClustDB: CLSK2397537 - BioCyc: SACI56780:SYN_00964-MONOMER - GO: GO:0005737 - GO: GO:0006935 - HAMAP: MF_00099 - InterPro: IPR011006 - InterPro: IPR008248 - InterPro: IPR000673 - InterPro: IPR001789 - Gene3D: G3DSA:3.40.50.180 - PIRSF: PIRSF000876 - SMART: SM00448
Pfam domain/function: PF01339 CheB_methylest; PF00072 Response_reg; SSF52738 Chemotax_RR_pGlu_Me-esterase; SSF52172 CheY_like
EC number: =3.1.1.61
Molecular weight: Translated: 36651; Mature: 36520
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: PS50122 CHEB; PS50110 RESPONSE_REGULATORY
Important sites: ACT_SITE 166-166 ACT_SITE 192-192 ACT_SITE 288-288
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIKVLVVDDSAIVRKIFTEELSKYPDIEVVGSAPDPFVARDKIVHLKPDVITLDIEMP CCCEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCEEEEEEECC RMDGLTFLKKLMRHYPLPAIIVSSLTPKGGKLTLEAMDIGAVDAIAKPGSSYSVGDMSGQ CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCCHH LVEKIRAASGARVVRKSTQEMFQPGSRLSIRSLAETSNKVIAIGASTGGTEALKNVLSRM HHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHC PPDSPGILVVQHMPANFTTAFAERLNSLCQIGVKEAADNDSVTPGTALIAPGNYHMILRR CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCCCEEEEECCCEEEEEEE SGARYYVQIKMGPMVHHQRPAVDVLFKSTAKYAGANAIGVILTGMGADGAAGLLEMKQMG CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCC AGTIAQNEKSCIVYGMPKEAVKIGAVDKIVHLDSIADEIVRMV CCCCCCCCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHC >Mature Secondary Structure SKIKVLVVDDSAIVRKIFTEELSKYPDIEVVGSAPDPFVARDKIVHLKPDVITLDIEMP CCEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCEEEEEEECC RMDGLTFLKKLMRHYPLPAIIVSSLTPKGGKLTLEAMDIGAVDAIAKPGSSYSVGDMSGQ CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCCHH LVEKIRAASGARVVRKSTQEMFQPGSRLSIRSLAETSNKVIAIGASTGGTEALKNVLSRM HHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHC PPDSPGILVVQHMPANFTTAFAERLNSLCQIGVKEAADNDSVTPGTALIAPGNYHMILRR CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCCCEEEEECCCEEEEEEE SGARYYVQIKMGPMVHHQRPAVDVLFKSTAKYAGANAIGVILTGMGADGAAGLLEMKQMG CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCC AGTIAQNEKSCIVYGMPKEAVKIGAVDKIVHLDSIADEIVRMV CCCCCCCCCCEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA