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The map label for this gene is cheD1

Identifier: 85859034

GI number: 85859034

Start: 1211600

End: 1212082

Strand: Direct

Name: cheD1

Synonym: SYN_00969

Alternate gene names: 85859034

Gene position: 1211600-1212082 (Clockwise)

Preceding gene: 85859033

Following gene: 85859035

Centisome position: 38.11

GC content: 47.83

Gene sequence:

>483_bases
ATGGGTGACGTGATTGTAAGCATTTCGGATTTTAGAGTGAGCAATAATGTCGGCGACATTCTTGTAACCTACGCGCTGGG
TTCCTGCATTGCCGTAGCCATTTACGATCCCAAAGTAAAGGTCGGAGGGCTTTTGCACTATATGCTTCCTGACTCTTCTC
TGGATGTTGACAAGGCAAAAACAACCCCCGGCATGTTTGCCGATACGGGAATCCCTCTTTTGTTCAAAGCCTGTTACAGC
CTGGGGGCACAGAAGAAATCGATGATCGTCAAAGTCGCTGGCGGTGCAAGCATCCTGGATGATACGAATTTTTTCCGTAT
CGGTCAGAAAAATATCATGATGGCTCGCAAGATGTTCTGGAAGAACAATGTGCTGATCAACGGGGAGGATACGGGCAGCA
ACTGCAATCGAACCGTACGCCTGGAGATCAAAACGGGCAAGGTTTTTGTCAAGAGTTCGGGTGGACCATTAAGGGAATTG
TAA

Upstream 100 bases:

>100_bases
GAACAAGGGCGGATATTTTTTTATAGGACACTCTGAAAGTCTTGCCGGTTTGGATAATGCTTTTAAGTATGTCGAGCCCA
GTGTTTATCGGAAGTAAGCT

Downstream 100 bases:

>100_bases
TGATAAATCAGTTAATGCGATCGGTCGATAATCTTCCTGCGTTTCCTGTTACCGTCATCAAGGTAATGGATCTCTTGTCA
CGCGACGACTATTCCATAGC

Product: chemotaxis protein that stimulates methylation of MCP proteins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MGDVIVSISDFRVSNNVGDILVTYALGSCIAVAIYDPKVKVGGLLHYMLPDSSLDVDKAKTTPGMFADTGIPLLFKACYS
LGAQKKSMIVKVAGGASILDDTNFFRIGQKNIMMARKMFWKNNVLINGEDTGSNCNRTVRLEIKTGKVFVKSSGGPLREL

Sequences:

>Translated_160_residues
MGDVIVSISDFRVSNNVGDILVTYALGSCIAVAIYDPKVKVGGLLHYMLPDSSLDVDKAKTTPGMFADTGIPLLFKACYS
LGAQKKSMIVKVAGGASILDDTNFFRIGQKNIMMARKMFWKNNVLINGEDTGSNCNRTVRLEIKTGKVFVKSSGGPLREL
>Mature_159_residues
GDVIVSISDFRVSNNVGDILVTYALGSCIAVAIYDPKVKVGGLLHYMLPDSSLDVDKAKTTPGMFADTGIPLLFKACYSL
GAQKKSMIVKVAGGASILDDTNFFRIGQKNIMMARKMFWKNNVLINGEDTGSNCNRTVRLEIKTGKVFVKSSGGPLREL

Specific function: Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis

COG id: COG1871

COG function: function code NT; Chemotaxis protein; stimulates methylation of MCP proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CheD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CHED1_SYNAS (Q2LSK9)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_461236.1
- HSSP:   Q9X005
- ProteinModelPortal:   Q2LSK9
- SMR:   Q2LSK9
- STRING:   Q2LSK9
- GeneID:   3884136
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_00969
- NMPDR:   fig|56780.10.peg.1170
- eggNOG:   COG1871
- HOGENOM:   HBG531149
- OMA:   KVGIGDY
- ProtClustDB:   CLSK771725
- BioCyc:   SACI56780:SYN_00969-MONOMER
- GO:   GO:0006935
- HAMAP:   MF_01440
- InterPro:   IPR005659

Pfam domain/function: PF03975 CheD

EC number: =3.5.1.44

Molecular weight: Translated: 17313; Mature: 17181

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDVIVSISDFRVSNNVGDILVTYALGSCIAVAIYDPKVKVGGLLHYMLPDSSLDVDKAK
CCCEEEEEEEEEECCCCCHHHHEEHHCCEEEEEEECCCEEECCEEEEECCCCCCCCCCCC
TTPGMFADTGIPLLFKACYSLGAQKKSMIVKVAGGASILDDTNFFRIGQKNIMMARKMFW
CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCEEEECCHHHHHHHHHHH
KNNVLINGEDTGSNCNRTVRLEIKTGKVFVKSSGGPLREL
CCCEEEECCCCCCCCCEEEEEEEEECEEEEECCCCCCCCC
>Mature Secondary Structure 
GDVIVSISDFRVSNNVGDILVTYALGSCIAVAIYDPKVKVGGLLHYMLPDSSLDVDKAK
CCEEEEEEEEEECCCCCHHHHEEHHCCEEEEEEECCCEEECCEEEEECCCCCCCCCCCC
TTPGMFADTGIPLLFKACYSLGAQKKSMIVKVAGGASILDDTNFFRIGQKNIMMARKMFW
CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCEEEECCHHHHHHHHHHH
KNNVLINGEDTGSNCNRTVRLEIKTGKVFVKSSGGPLREL
CCCEEEECCCCCCCCCEEEEEEEEECEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA