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The map label for this gene is xerC [H]

Identifier: 85859016

GI number: 85859016

Start: 1193291

End: 1194241

Strand: Direct

Name: xerC [H]

Synonym: SYN_00121

Alternate gene names: 85859016

Gene position: 1193291-1194241 (Clockwise)

Preceding gene: 85859014

Following gene: 85859019

Centisome position: 37.53

GC content: 45.11

Gene sequence:

>951_bases
GTGGGCCAGTATTCAAGAAAACTAAAGCGCGGCGTCCGTTGGTATTATTCAGGCCAATATCTTGGGCAGAAATATTTTAG
CAGAGCAATATATCTGACAAAACAGGAAGCGAAGAGGGCGGAAAGGGAAACGATTGCAGAGATGGACCAAAAAGCCCGCC
AGCCCGGCGAAGTGCTGCTAAAAGACCTGATTGAAGAACGGCTTGACATTATTCTGCACAAGAAATCAAAAGTTTATTAC
CGCGAGAACCGGCTTTACATGAAAAAACTTCTCGATGCCGTTGGTAATATCCCGATTCAGGACATTACCAGGCAGCAGAT
ACACAAGGTCTTGATTGATTATTCGAAAGATTTGCGAAAGAGGGGAAAGACAGACCATAAGGCTAATGCCATGATCAGAT
GTTTTAAAGCCCTTTTCAATTACGGCATCAGTCTTTACGAGCTAAATATGAAGAATCCGGTCAAGGGAATCCAGTTTTTC
AGCGTTGACATCAATCTGAAATACATTCCGACCGATGAGGATATTTTAGCCGTTAAAGAGGGACTGACCGAGGAGCAGAA
ATTTTTGATCGATTTCTGCCAGCAGACCGGCTGTAGGATCAATGAAGCTTTGAGGCTCAAGGGAAGCGATATCGGGGACA
ATTACATTGTCCTCTATACCCGGAAAGCCAGGAATTCGAATCTCACGCCTAGGAAGATCCCGAAGCCGCCTTGCCTTGCC
GGCTATAAACCGAAAAAAGAAAGGGTTTTCTCAGAGTGGTCCAACGTCCCAAGGTTTTTGGAAAAGCGGGTAAAAAAACT
CGATATGAAATACTGGACATGGCACAACCTGCGTCACAAATATGCCAGCGAGCTCTCGAAGCGGAATGTGCCGCTGTTCG
AGATCATGAACCTGCTTGGCCACTCCAATATGAAAACCACCCAAATTTATCTCCAGCTAATTGGATTTTAG

Upstream 100 bases:

>100_bases
CACTCCTCCTAAACTCCAAAATTTTTTCTCAAAGATCCTTACCTAATTGAGATTTAATTTAAATAACCGCTCTTTTTAAA
AATATCAAGGAGGTGATTAA

Downstream 100 bases:

>100_bases
CCATTCTTTAGCCGGAAAAACAAAACGGACATTCAAGAATGATCTTAAATGTCCGTTTTTATTATGGTGGGCCGTATGGG
ACTTGAACCCACGGCCAACG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MGQYSRKLKRGVRWYYSGQYLGQKYFSRAIYLTKQEAKRAERETIAEMDQKARQPGEVLLKDLIEERLDIILHKKSKVYY
RENRLYMKKLLDAVGNIPIQDITRQQIHKVLIDYSKDLRKRGKTDHKANAMIRCFKALFNYGISLYELNMKNPVKGIQFF
SVDINLKYIPTDEDILAVKEGLTEEQKFLIDFCQQTGCRINEALRLKGSDIGDNYIVLYTRKARNSNLTPRKIPKPPCLA
GYKPKKERVFSEWSNVPRFLEKRVKKLDMKYWTWHNLRHKYASELSKRNVPLFEIMNLLGHSNMKTTQIYLQLIGF

Sequences:

>Translated_316_residues
MGQYSRKLKRGVRWYYSGQYLGQKYFSRAIYLTKQEAKRAERETIAEMDQKARQPGEVLLKDLIEERLDIILHKKSKVYY
RENRLYMKKLLDAVGNIPIQDITRQQIHKVLIDYSKDLRKRGKTDHKANAMIRCFKALFNYGISLYELNMKNPVKGIQFF
SVDINLKYIPTDEDILAVKEGLTEEQKFLIDFCQQTGCRINEALRLKGSDIGDNYIVLYTRKARNSNLTPRKIPKPPCLA
GYKPKKERVFSEWSNVPRFLEKRVKKLDMKYWTWHNLRHKYASELSKRNVPLFEIMNLLGHSNMKTTQIYLQLIGF
>Mature_315_residues
GQYSRKLKRGVRWYYSGQYLGQKYFSRAIYLTKQEAKRAERETIAEMDQKARQPGEVLLKDLIEERLDIILHKKSKVYYR
ENRLYMKKLLDAVGNIPIQDITRQQIHKVLIDYSKDLRKRGKTDHKANAMIRCFKALFNYGISLYELNMKNPVKGIQFFS
VDINLKYIPTDEDILAVKEGLTEEQKFLIDFCQQTGCRINEALRLKGSDIGDNYIVLYTRKARNSNLTPRKIPKPPCLAG
YKPKKERVFSEWSNVPRFLEKRVKKLDMKYWTWHNLRHKYASELSKRNVPLFEIMNLLGHSNMKTTQIYLQLIGF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37446; Mature: 37315

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQYSRKLKRGVRWYYSGQYLGQKYFSRAIYLTKQEAKRAERETIAEMDQKARQPGEVLL
CCHHHHHHHHCCEEEECCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCHHHHH
KDLIEERLDIILHKKSKVYYRENRLYMKKLLDAVGNIPIQDITRQQIHKVLIDYSKDLRK
HHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
RGKTDHKANAMIRCFKALFNYGISLYELNMKNPVKGIQFFSVDINLKYIPTDEDILAVKE
CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEEEECCCCHHHHHHH
GLTEEQKFLIDFCQQTGCRINEALRLKGSDIGDNYIVLYTRKARNSNLTPRKIPKPPCLA
CCCHHHHHHHHHHHHCCCCCCHHHEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
GYKPKKERVFSEWSNVPRFLEKRVKKLDMKYWTWHNLRHKYASELSKRNVPLFEIMNLLG
CCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
HSNMKTTQIYLQLIGF
CCCCHHHHHHHHHHCC
>Mature Secondary Structure 
GQYSRKLKRGVRWYYSGQYLGQKYFSRAIYLTKQEAKRAERETIAEMDQKARQPGEVLL
CHHHHHHHHCCEEEECCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCHHHHH
KDLIEERLDIILHKKSKVYYRENRLYMKKLLDAVGNIPIQDITRQQIHKVLIDYSKDLRK
HHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
RGKTDHKANAMIRCFKALFNYGISLYELNMKNPVKGIQFFSVDINLKYIPTDEDILAVKE
CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEEEECCCCHHHHHHH
GLTEEQKFLIDFCQQTGCRINEALRLKGSDIGDNYIVLYTRKARNSNLTPRKIPKPPCLA
CCCHHHHHHHHHHHHCCCCCCHHHEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
GYKPKKERVFSEWSNVPRFLEKRVKKLDMKYWTWHNLRHKYASELSKRNVPLFEIMNLLG
CCCCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
HSNMKTTQIYLQLIGF
CCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA