| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is yfiQ [C]
Identifier: 85858899
GI number: 85858899
Start: 1080538
End: 1082631
Strand: Direct
Name: yfiQ [C]
Synonym: SYN_02112
Alternate gene names: 85858899
Gene position: 1080538-1082631 (Clockwise)
Preceding gene: 85858898
Following gene: 85858900
Centisome position: 33.99
GC content: 54.78
Gene sequence:
>2094_bases ATGAAATATTTTTTGGAGCCGGAATCTGTAGCCATGATCGGAACACCCAGACAAACGGGCCCGGACACGTACAATGGAGT AGAAATGATGCTCCGCTACGGCTACCAGGGACGCATCTATCCGATCAACCCGAAAGCCGATGAAATCTGTGGTCTCAGGG CATTTCCCTCCATAACCGAAGTGCCGGAGACGGTAAACCTGGTGATTATCTCCATGGGTCGGGACCAGGTGGTTGCTGCT TTTAAAGAGTGCATTCAATCCGGTGTGAAGCGGGTGATGATCGTCAGCCAGGGTTTTGCCGATGCCGATCCGCATGGGGA GAAGCTCCAGAACGAGATCGTTCGGCTGGCTCGCGAGAGCGGCATACGGGTTGTCGGCCCCAACACACTGGGAATTCTGA ACAATTTCCGTAATTTCTCGACCAGCTTTGTCGATCTCATCAAACCGAAGAAGATTCCGCCGGTGTCGTTGATCGCCCAG ACGGGTATGATCCAGGTGGCCTCGCACAACCTCGCCTATCATGACTGGGGAAAGGCACTCGATATTGGGAATGCCTGTGA TGTGGATTTTGTCGACGCGTTGGAATATTTCGGAGCCGATCCGGAAACCCGGGTTATCGTGGTGCACATGGAAGGCATCA TCCGGGGAAGGGAATTCCTGAAAGCAGCCTCCCGGATATCCCCTGACAAACCGATCATCATTTTCAAAACCGGAAGGACT ACGGCCGGTGCCAAGGCCGCCCTCTCCCATACGGCTTCTCTTACCGGGGAGGACGAAATCGCTGAGGCTGCCTTCAACCG CGCCGGCCTCATTCGCGTGAAAAATGGTTCCGAACTGAAAGATGCCATCCGTTCTTTTATACAGTTTGAAGATATGGAGG GGCCACGACTGGGAGTCCTGACCCCCACCGGAGCGGGAGGGATCATGGCAACGGATGCCTGTGAAGATTTCGGATTGAAG ATTGCGGAATTGCCTGAGGGCCTTCCCGATAAGCTGAAAAAGGGGATACCGGACTGGGTTCACATCGGCAATCCTATCGA CATCTGGCCTGTGGGCATGCTCGGGGGCGGTTACTCTCAGGCTTACAGAACCGCCCTGATGGAATTGCTGAAATCGCCGA AGGTCGATGGTGTTTTGGGGGTGACGGTAAGCGTGGATTCCCCCCTTCACAAAAATATTGACATTGTCGAGGCGGTTGCA GCCGCCCGGCGGGAAAGCGGCAGTCGGAAACCAATTGCCATGTGGGTCTATGGTTCGGGAACCGACGACACTGTGGAGCG CCTTGAACCCGCCACCGACAATGTCGCCTGCTTCGAATCCGTCGAGCGGGCTGCGCAGGGCCTGTCGTTTTGTTACCGCT ACCATCAGCTCAGAAAACGGGAAATCTCCTCCCAGCGGAGTTTCCCTTATGACCACGAGCAGGCCGAATCGCTGTTGCAG AAGGGAAGAGGGCGTAAGATCCTGCTTGGAGAGGATGCCCTTGCCCTGCTGGCCGCTTTCGGGATTCACGTATCGCGGGG AAAGATCGCACGAAACTGGAAAGAAATCAAAGAAGCGGCCGACGAACTGTCTTATCCACTTGTCCTGAAGTTGTCAGGCG AAGCCTTTCTTCACAAAAGCGACTGGGGGGGGGTAATGACCGGGATTCGCAATAAAAAGGAGCTTCGTGAGGCCTTTCAG GGGATGAAAGAAAAGGTAAATGATCGCAATCCAGCGGTGAAAATCGGTTTCCATGTGCAGGAACAGGTCGGGGGAAAGGA ACTCCTCGTTGGTCTCAAACTTGACGCACAGTTCGGCCATATCCTTGCCTGCGGATACGGAGGCATATACACGGAGGTCT TCAAGGACGTCAGCCGCGAACTCGTACCTGTTGGAAGGCCGGAGGCCGAAAAAATGATTTCGTCTCTGAAGATCTATCCT TTGCTGAAGGGCGTGCGTGGTGAAGCCTGTGTGGATTGGGAAGGGCTTCTGGAAACCCTGGAAAGGGTTTCTTTCCTGGC CACGGAGGTCCCGGACATCAAGGAACTGGACATCAATCCTCTGATGGCCGATGCCTCAGGCTGCGTGGCTGTCGATGCGC GGATTGTCTGGTAA
Upstream 100 bases:
>100_bases GCAACAAAAAAGTGAGTCAGTCAAGGGGCAGGGATCTCGGAGAATCTCAAAGAGGTTAAAAACGGATCTTGAACTTATGT GAAAGGAGGAGGAATCTGAA
Downstream 100 bases:
>100_bases TTCAAATCTCAGTCATGGATGAATTGAGAAGATGTTGCTTTTCGTAATGCGAGTATATGCGGAGGGGTTTTTGTGTCATG AGGGTTGAAACACTGCAACA
Product: acetyl-CoA synthetase subunit beta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 697; Mature: 697
Protein sequence:
>697_residues MKYFLEPESVAMIGTPRQTGPDTYNGVEMMLRYGYQGRIYPINPKADEICGLRAFPSITEVPETVNLVIISMGRDQVVAA FKECIQSGVKRVMIVSQGFADADPHGEKLQNEIVRLARESGIRVVGPNTLGILNNFRNFSTSFVDLIKPKKIPPVSLIAQ TGMIQVASHNLAYHDWGKALDIGNACDVDFVDALEYFGADPETRVIVVHMEGIIRGREFLKAASRISPDKPIIIFKTGRT TAGAKAALSHTASLTGEDEIAEAAFNRAGLIRVKNGSELKDAIRSFIQFEDMEGPRLGVLTPTGAGGIMATDACEDFGLK IAELPEGLPDKLKKGIPDWVHIGNPIDIWPVGMLGGGYSQAYRTALMELLKSPKVDGVLGVTVSVDSPLHKNIDIVEAVA AARRESGSRKPIAMWVYGSGTDDTVERLEPATDNVACFESVERAAQGLSFCYRYHQLRKREISSQRSFPYDHEQAESLLQ KGRGRKILLGEDALALLAAFGIHVSRGKIARNWKEIKEAADELSYPLVLKLSGEAFLHKSDWGGVMTGIRNKKELREAFQ GMKEKVNDRNPAVKIGFHVQEQVGGKELLVGLKLDAQFGHILACGYGGIYTEVFKDVSRELVPVGRPEAEKMISSLKIYP LLKGVRGEACVDWEGLLETLERVSFLATEVPDIKELDINPLMADASGCVAVDARIVW
Sequences:
>Translated_697_residues MKYFLEPESVAMIGTPRQTGPDTYNGVEMMLRYGYQGRIYPINPKADEICGLRAFPSITEVPETVNLVIISMGRDQVVAA FKECIQSGVKRVMIVSQGFADADPHGEKLQNEIVRLARESGIRVVGPNTLGILNNFRNFSTSFVDLIKPKKIPPVSLIAQ TGMIQVASHNLAYHDWGKALDIGNACDVDFVDALEYFGADPETRVIVVHMEGIIRGREFLKAASRISPDKPIIIFKTGRT TAGAKAALSHTASLTGEDEIAEAAFNRAGLIRVKNGSELKDAIRSFIQFEDMEGPRLGVLTPTGAGGIMATDACEDFGLK IAELPEGLPDKLKKGIPDWVHIGNPIDIWPVGMLGGGYSQAYRTALMELLKSPKVDGVLGVTVSVDSPLHKNIDIVEAVA AARRESGSRKPIAMWVYGSGTDDTVERLEPATDNVACFESVERAAQGLSFCYRYHQLRKREISSQRSFPYDHEQAESLLQ KGRGRKILLGEDALALLAAFGIHVSRGKIARNWKEIKEAADELSYPLVLKLSGEAFLHKSDWGGVMTGIRNKKELREAFQ GMKEKVNDRNPAVKIGFHVQEQVGGKELLVGLKLDAQFGHILACGYGGIYTEVFKDVSRELVPVGRPEAEKMISSLKIYP LLKGVRGEACVDWEGLLETLERVSFLATEVPDIKELDINPLMADASGCVAVDARIVW >Mature_697_residues MKYFLEPESVAMIGTPRQTGPDTYNGVEMMLRYGYQGRIYPINPKADEICGLRAFPSITEVPETVNLVIISMGRDQVVAA FKECIQSGVKRVMIVSQGFADADPHGEKLQNEIVRLARESGIRVVGPNTLGILNNFRNFSTSFVDLIKPKKIPPVSLIAQ TGMIQVASHNLAYHDWGKALDIGNACDVDFVDALEYFGADPETRVIVVHMEGIIRGREFLKAASRISPDKPIIIFKTGRT TAGAKAALSHTASLTGEDEIAEAAFNRAGLIRVKNGSELKDAIRSFIQFEDMEGPRLGVLTPTGAGGIMATDACEDFGLK IAELPEGLPDKLKKGIPDWVHIGNPIDIWPVGMLGGGYSQAYRTALMELLKSPKVDGVLGVTVSVDSPLHKNIDIVEAVA AARRESGSRKPIAMWVYGSGTDDTVERLEPATDNVACFESVERAAQGLSFCYRYHQLRKREISSQRSFPYDHEQAESLLQ KGRGRKILLGEDALALLAAFGIHVSRGKIARNWKEIKEAADELSYPLVLKLSGEAFLHKSDWGGVMTGIRNKKELREAFQ GMKEKVNDRNPAVKIGFHVQEQVGGKELLVGLKLDAQFGHILACGYGGIYTEVFKDVSRELVPVGRPEAEKMISSLKIYP LLKGVRGEACVDWEGLLETLERVSFLATEVPDIKELDINPLMADASGCVAVDARIVW
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfiQ [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=728, Percent_Identity=26.510989010989, Blast_Score=206, Evalue=5e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014089 - InterPro: IPR013650 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR005809 - InterPro: IPR016102 [H]
Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]
EC number: NA
Molecular weight: Translated: 76405; Mature: 76405
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYFLEPESVAMIGTPRQTGPDTYNGVEMMLRYGYQGRIYPINPKADEICGLRAFPSITE CCCEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCHHC VPETVNLVIISMGRDQVVAAFKECIQSGVKRVMIVSQGFADADPHGEKLQNEIVRLARES CCCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHC GIRVVGPNTLGILNNFRNFSTSFVDLIKPKKIPPVSLIAQTGMIQVASHNLAYHDWGKAL CCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCEEEEECCCCEECCCCCCC DIGNACDVDFVDALEYFGADPETRVIVVHMEGIIRGREFLKAASRISPDKPIIIFKTGRT CCCCCCCCHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCC TAGAKAALSHTASLTGEDEIAEAAFNRAGLIRVKNGSELKDAIRSFIQFEDMEGPRLGVL CCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE TPTGAGGIMATDACEDFGLKIAELPEGLPDKLKKGIPDWVHIGNPIDIWPVGMLGGGYSQ CCCCCCCCEECCCHHHHCCCHHHCCCCCHHHHHHCCCCCEECCCCCCEEECCCCCCCHHH AYRTALMELLKSPKVDGVLGVTVSVDSPLHKNIDIVEAVAAARRESGSRKPIAMWVYGSG HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC TDDTVERLEPATDNVACFESVERAAQGLSFCYRYHQLRKREISSQRSFPYDHEQAESLLQ CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KGRGRKILLGEDALALLAAFGIHVSRGKIARNWKEIKEAADELSYPLVLKLSGEAFLHKS CCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEC DWGGVMTGIRNKKELREAFQGMKEKVNDRNPAVKIGFHVQEQVGGKELLVGLKLDAQFGH CCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCEEEEEEEECCCCCC ILACGYGGIYTEVFKDVSRELVPVGRPEAEKMISSLKIYPLLKGVRGEACVDWEGLLETL EEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHH ERVSFLATEVPDIKELDINPLMADASGCVAVDARIVW HHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEC >Mature Secondary Structure MKYFLEPESVAMIGTPRQTGPDTYNGVEMMLRYGYQGRIYPINPKADEICGLRAFPSITE CCCEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCHHC VPETVNLVIISMGRDQVVAAFKECIQSGVKRVMIVSQGFADADPHGEKLQNEIVRLARES CCCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHC GIRVVGPNTLGILNNFRNFSTSFVDLIKPKKIPPVSLIAQTGMIQVASHNLAYHDWGKAL CCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCEEEEECCCCEECCCCCCC DIGNACDVDFVDALEYFGADPETRVIVVHMEGIIRGREFLKAASRISPDKPIIIFKTGRT CCCCCCCCHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCC TAGAKAALSHTASLTGEDEIAEAAFNRAGLIRVKNGSELKDAIRSFIQFEDMEGPRLGVL CCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE TPTGAGGIMATDACEDFGLKIAELPEGLPDKLKKGIPDWVHIGNPIDIWPVGMLGGGYSQ CCCCCCCCEECCCHHHHCCCHHHCCCCCHHHHHHCCCCCEECCCCCCEEECCCCCCCHHH AYRTALMELLKSPKVDGVLGVTVSVDSPLHKNIDIVEAVAAARRESGSRKPIAMWVYGSG HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC TDDTVERLEPATDNVACFESVERAAQGLSFCYRYHQLRKREISSQRSFPYDHEQAESLLQ CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KGRGRKILLGEDALALLAAFGIHVSRGKIARNWKEIKEAADELSYPLVLKLSGEAFLHKS CCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEC DWGGVMTGIRNKKELREAFQGMKEKVNDRNPAVKIGFHVQEQVGGKELLVGLKLDAQFGH CCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCEEEEEEEECCCCCC ILACGYGGIYTEVFKDVSRELVPVGRPEAEKMISSLKIYPLLKGVRGEACVDWEGLLETL EEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHH ERVSFLATEVPDIKELDINPLMADASGCVAVDARIVW HHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]