Click here to switch to the map view.

The map label for this gene is oprF [H]

Identifier: 85858897

GI number: 85858897

Start: 1078840

End: 1079382

Strand: Direct

Name: oprF [H]

Synonym: SYN_02110

Alternate gene names: 85858897

Gene position: 1078840-1079382 (Clockwise)

Preceding gene: 85858896

Following gene: 85858898

Centisome position: 33.93

GC content: 50.46

Gene sequence:

>543_bases
TTGCTCGGACAGGTTATCGGTCACAGTACGAAGAGCACACTGATCGGTACGGCCATCGGCGCGGCAGTGGGTGGACTTGG
AGGCGCTGGAGTCGGCAGAATGATGGACAATCAGGAAAAGGACATGCGTAACGCTTTGGGCGCCTCAGATGCCGCAGCCG
TTACCAGGGAAGGCAACCTTCTGGCAGTTACCTTCAAAGGCGATGTCACCTTTGATACGAACTCGGCAGAGATCAGGCCT
GATCTTTACTTTGAAATAGACCGCGTTGCAGGCGTTCTTAAGCAATACCCCGACACTTTCATCAGGGTGGAGGGTTATAC
CGACAGCAAAGGTTCCGATACATATAACATGGACCTTTCAAAACGACGTGCCAACGCAGTAAAGAATTTACTGGTTCAGC
GTGGCGTAGCAGAAAACCGCATTGAGGTGGTTGGTTTTGGAGAAACTATGCCTGTTGCAACCAATGATACAGAGGCAGGA
CGCCAGAAGAACAGAAGAGTAGAAATTAAGATTGCACAGCAAACACAGGCTAAGCCTCAATAG

Upstream 100 bases:

>100_bases
AGCCAGGTTATGACGTCTATGACGGTGGAGGCGTTGGCTGCGAACCACCGCCCATAGTACTTGAGGCGGCTCCAGAACAG
GTGGTGTTGCAGCAGGAGCG

Downstream 100 bases:

>100_bases
ACTACTATAGATATTGTAACATGATAAGAAGATCGAGGTTAAAAATAGAAAAGAGAAGGAGGAAAAAGACTAATGAAGTT
GTGTAGGATTATGCTCGTGG

Product: outer membrane OmpA family protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLGQVIGHSTKSTLIGTAIGAAVGGLGGAGVGRMMDNQEKDMRNALGASDAAAVTREGNLLAVTFKGDVTFDTNSAEIRP
DLYFEIDRVAGVLKQYPDTFIRVEGYTDSKGSDTYNMDLSKRRANAVKNLLVQRGVAENRIEVVGFGETMPVATNDTEAG
RQKNRRVEIKIAQQTQAKPQ

Sequences:

>Translated_180_residues
MLGQVIGHSTKSTLIGTAIGAAVGGLGGAGVGRMMDNQEKDMRNALGASDAAAVTREGNLLAVTFKGDVTFDTNSAEIRP
DLYFEIDRVAGVLKQYPDTFIRVEGYTDSKGSDTYNMDLSKRRANAVKNLLVQRGVAENRIEVVGFGETMPVATNDTEAG
RQKNRRVEIKIAQQTQAKPQ
>Mature_180_residues
MLGQVIGHSTKSTLIGTAIGAAVGGLGGAGVGRMMDNQEKDMRNALGASDAAAVTREGNLLAVTFKGDVTFDTNSAEIRP
DLYFEIDRVAGVLKQYPDTFIRVEGYTDSKGSDTYNMDLSKRRANAVKNLLVQRGVAENRIEVVGFGETMPVATNDTEAG
RQKNRRVEIKIAQQTQAKPQ

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=184, Percent_Identity=35.8695652173913, Blast_Score=109, Evalue=8e-26,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=38.7755102040816, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787191, Length=119, Percent_Identity=35.2941176470588, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788957, Length=104, Percent_Identity=33.6538461538462, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 19364; Mature: 19364

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGQVIGHSTKSTLIGTAIGAAVGGLGGAGVGRMMDNQEKDMRNALGASDAAAVTREGNL
CCCCHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCCCHHEEEECCCE
LAVTFKGDVTFDTNSAEIRPDLYFEIDRVAGVLKQYPDTFIRVEGYTDSKGSDTYNMDLS
EEEEEECCEEECCCCCCCCCCCEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHH
KRRANAVKNLLVQRGVAENRIEVVGFGETMPVATNDTEAGRQKNRRVEIKIAQQTQAKPQ
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCCC
>Mature Secondary Structure
MLGQVIGHSTKSTLIGTAIGAAVGGLGGAGVGRMMDNQEKDMRNALGASDAAAVTREGNL
CCCCHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCCCHHEEEECCCE
LAVTFKGDVTFDTNSAEIRPDLYFEIDRVAGVLKQYPDTFIRVEGYTDSKGSDTYNMDLS
EEEEEECCEEECCCCCCCCCCCEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHH
KRRANAVKNLLVQRGVAENRIEVVGFGETMPVATNDTEAGRQKNRRVEIKIAQQTQAKPQ
HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]