| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is glgP [H]
Identifier: 85858860
GI number: 85858860
Start: 1044738
End: 1047290
Strand: Direct
Name: glgP [H]
Synonym: SYN_01331
Alternate gene names: 85858860
Gene position: 1044738-1047290 (Clockwise)
Preceding gene: 85858858
Following gene: 85858865
Centisome position: 32.86
GC content: 54.21
Gene sequence:
>2553_bases ATGCAACCCGGTACGCCTTTTGTCATCGAGGTCAACCCCCGCATCCCTCGCCGCCTGTCCCGGATGACCGAGTTGGCCAA TAACCTCTGGTACAGTTGGGATCGGCCTACCCGTACCCTGTTCGCACTTCTGCACCCAGGCCTTTGGGATAAGGTAAATC ACAATCCCAAGGCCTTCCTCAAAAGAGTGGACGAGGAGCGCCTGACAGAGGCGGCGGAAGACCACATCTTCCTGGGCAGC TACAACCGCGTGCTTTCAGCCTTTGACACGTACATGAGTGAACCCCTGCGCCGGGATATGCCCCTGGATCTTAATCCAGG TGATCTGATCGCCTATTTCTGCGCCGAGTTCGGTTTCCACGAGAGTTTTCCTGTTTATTCCGGGGGGCTGGGCATTCTGG CCGGTGATCATTGCAAGTCTGCTTCCGATCTGCGTCTGCCCTTCGTAGCAGTAGGTTTGCTGTATCGTCAGGGATACTTC TTACAGCGCATCGACAACGATGGAAATCAAATTGTCACGTATACCGATTCAGAGTTCGAGGATTTGCCGATTAAGCCTGC TCTGATTGAGGAAGAAACAGAAATCCATGTATATGTCGAGTTGCCGGGCCGTAATGTGGAGGTAAAGGTATGGGTGGCGC GTATCGGCCATGTGCGGCTGTATCTGCTGGATACCTATTTGCCCGCCAACATGGAGGAGGACCGTTACATTACCCATCAG CTCTATGGCGGAGACAAGCATACCCGCATCAAGCAGGAGATCGTTTTGGGCATCGGAGGCGTACGCGCCCTGGAGGCACT GGGATTGAATCCAACAGTTTATCATATCAATGAAGGCCATGCCGCTTTTATGATGCTGGAACGCATACGCCGTAAAGTAA AAAAAGGGCTTTCTTTCCATGCAGCCTTGGAGGCGACGGCAGCCAACACGGTGTTTACAACCCATACACCGGTGCCGGCA GGACATGACCTCTTCGAGCAGGAAATGATCTGGAGCTACTTCAGGGATTGCTTTAACGATCTGGGTGTGCAGCGCGACGA ATTCATGAAGCTGGGCGGCGCGAGTCACGGCCGGGATTTTAACATGACGAAACTGGCACTCAGCGGGACACGCCACCATA ATGGCGTGTCCCGAATCCACGGAAGGGTTTCCTCTAGAATTCTGTCCGATATGTGGCCTCAGGTACGTCCATGTGAGTCC CCTATGGACTTCATCACCAATGGAGTCCATGTTTCCACATTCCTTGCCAAGGAATGGCAGGACCTGTTCGACAGCATGCT GGGCTATGAATGGCGTCGACGCCAGACAGACGTCAAATTCTGGGAAAAGGTGGCGTCCATCCCGGACCATCATTTCTGGG CCGTGCACCAGGCGTTGAAGTCCCAAATGCTGTATTCGGTGCATCACCATGTCACCCAGCAGCACCTGCGCAATCACGGG TCCGACGCTCATCTTGTGCGTATGCTCAAGTTCGCCAATCCCCTTGATCCCAACGTATTGACCATTGGTTTCGCCCGCCG TTTCGCCACTTACAAGCGAGCTGCATTGATATTTGAGAACATGGACTGGCTGCGTTCCGTCGTCAAGGATGCAGACCGGC CCGTACTTTTCATTTTTGCGGGCAAGGCCCATCCGGCTGACAAGCCCGGACAGGAACTCATCCGCCGCATATTTGATATT TCGCGCTGGCCGGAATTTGAAGGAAAAATACTCATGGTTGAAGGATACGACATGGGCTTCGCCCGCCGGTTGGTTGCCGG CTGCGATGTGTGGTTGAACACCCCCATATATCCTCTTGAAGCATCCGGTACCTCGGGAATGAAGGCAGCCATGAACGGCG TGATCAACCTGTCGGTTGCAGATGGCTGGTGGGAGGAGGGTTACGACGGCAGCAACGGCTGGGCCATCAAGCCTGCCCCT GAATATTTCGACGAAACCCGCCGCGACCAGGAGGACAGCCGCGACCTTTACGAGCTGCTGCAGGATCAGGTCATTCCAAC ATATTACCGTCGCCACGAACTGGGTTTTTCCGATGAGTGGGTCAGCATGGCCAAGCGTTCCATCATTACCCTTTTGCCGC GTTTCAGTTCGGCCCGTATGGTCATGGAATACGTGAACAAGTTTTATGGACGCGCTTCACGCCAGTGGAGGCATTATTCC GAAAACGGATTTGCTGCCGCTCAACATCTTGCCAGCTGGAAAGCCAGAGTGCGGCAGGCATGGAGTGGCGTCAATTTGCG CCGCCTTGATGATCCCCGGAACCGCATCTGTTTCGGCGAAAGCACAGCTCTTAAGGTGGCAGTCGATCTGAACGGACTGA TGCATGAAGACGTGAGGGTGGAGGTGCTTATTGGCCGTGCTTCCAAACAGGGCGAGGACAGCAATGTGCAGGCGGCATTG ATGAAACCGGATGGCTGTGCTGGCAAGGAATGTCTGTTCAGTCTGGAGTTTACACCGGGGATTTGCGGCAAACTGCTCTA TAGAATAAGGGTGTATCCCTATCATGAATCTCTGACCCACCCGTTCGAAATGGGCTTGATGATGTGGCTGTGA
Upstream 100 bases:
>100_bases AAAAAGCGGATGGTAAGATGTTTATTCCTGCGCATTCGAGACGCGGAAATTTGAAGGAACCTTGTGGCTTGCCATCTGTC TGTGAGAAAGGAAATAATAT
Downstream 100 bases:
>100_bases TCCACACGAAAATTCTAAGCGATAAGCTTGCTCTGATTGATATCACTTAGATGATTTCCGGATTGAGGGATTTCCACTTC TTAATATTTCACCGGTTTTC
Product: glycogen phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MQPGTPFVIEVNPRIPRRLSRMTELANNLWYSWDRPTRTLFALLHPGLWDKVNHNPKAFLKRVDEERLTEAAEDHIFLGS YNRVLSAFDTYMSEPLRRDMPLDLNPGDLIAYFCAEFGFHESFPVYSGGLGILAGDHCKSASDLRLPFVAVGLLYRQGYF LQRIDNDGNQIVTYTDSEFEDLPIKPALIEEETEIHVYVELPGRNVEVKVWVARIGHVRLYLLDTYLPANMEEDRYITHQ LYGGDKHTRIKQEIVLGIGGVRALEALGLNPTVYHINEGHAAFMMLERIRRKVKKGLSFHAALEATAANTVFTTHTPVPA GHDLFEQEMIWSYFRDCFNDLGVQRDEFMKLGGASHGRDFNMTKLALSGTRHHNGVSRIHGRVSSRILSDMWPQVRPCES PMDFITNGVHVSTFLAKEWQDLFDSMLGYEWRRRQTDVKFWEKVASIPDHHFWAVHQALKSQMLYSVHHHVTQQHLRNHG SDAHLVRMLKFANPLDPNVLTIGFARRFATYKRAALIFENMDWLRSVVKDADRPVLFIFAGKAHPADKPGQELIRRIFDI SRWPEFEGKILMVEGYDMGFARRLVAGCDVWLNTPIYPLEASGTSGMKAAMNGVINLSVADGWWEEGYDGSNGWAIKPAP EYFDETRRDQEDSRDLYELLQDQVIPTYYRRHELGFSDEWVSMAKRSIITLLPRFSSARMVMEYVNKFYGRASRQWRHYS ENGFAAAQHLASWKARVRQAWSGVNLRRLDDPRNRICFGESTALKVAVDLNGLMHEDVRVEVLIGRASKQGEDSNVQAAL MKPDGCAGKECLFSLEFTPGICGKLLYRIRVYPYHESLTHPFEMGLMMWL
Sequences:
>Translated_850_residues MQPGTPFVIEVNPRIPRRLSRMTELANNLWYSWDRPTRTLFALLHPGLWDKVNHNPKAFLKRVDEERLTEAAEDHIFLGS YNRVLSAFDTYMSEPLRRDMPLDLNPGDLIAYFCAEFGFHESFPVYSGGLGILAGDHCKSASDLRLPFVAVGLLYRQGYF LQRIDNDGNQIVTYTDSEFEDLPIKPALIEEETEIHVYVELPGRNVEVKVWVARIGHVRLYLLDTYLPANMEEDRYITHQ LYGGDKHTRIKQEIVLGIGGVRALEALGLNPTVYHINEGHAAFMMLERIRRKVKKGLSFHAALEATAANTVFTTHTPVPA GHDLFEQEMIWSYFRDCFNDLGVQRDEFMKLGGASHGRDFNMTKLALSGTRHHNGVSRIHGRVSSRILSDMWPQVRPCES PMDFITNGVHVSTFLAKEWQDLFDSMLGYEWRRRQTDVKFWEKVASIPDHHFWAVHQALKSQMLYSVHHHVTQQHLRNHG SDAHLVRMLKFANPLDPNVLTIGFARRFATYKRAALIFENMDWLRSVVKDADRPVLFIFAGKAHPADKPGQELIRRIFDI SRWPEFEGKILMVEGYDMGFARRLVAGCDVWLNTPIYPLEASGTSGMKAAMNGVINLSVADGWWEEGYDGSNGWAIKPAP EYFDETRRDQEDSRDLYELLQDQVIPTYYRRHELGFSDEWVSMAKRSIITLLPRFSSARMVMEYVNKFYGRASRQWRHYS ENGFAAAQHLASWKARVRQAWSGVNLRRLDDPRNRICFGESTALKVAVDLNGLMHEDVRVEVLIGRASKQGEDSNVQAAL MKPDGCAGKECLFSLEFTPGICGKLLYRIRVYPYHESLTHPFEMGLMMWL >Mature_850_residues MQPGTPFVIEVNPRIPRRLSRMTELANNLWYSWDRPTRTLFALLHPGLWDKVNHNPKAFLKRVDEERLTEAAEDHIFLGS YNRVLSAFDTYMSEPLRRDMPLDLNPGDLIAYFCAEFGFHESFPVYSGGLGILAGDHCKSASDLRLPFVAVGLLYRQGYF LQRIDNDGNQIVTYTDSEFEDLPIKPALIEEETEIHVYVELPGRNVEVKVWVARIGHVRLYLLDTYLPANMEEDRYITHQ LYGGDKHTRIKQEIVLGIGGVRALEALGLNPTVYHINEGHAAFMMLERIRRKVKKGLSFHAALEATAANTVFTTHTPVPA GHDLFEQEMIWSYFRDCFNDLGVQRDEFMKLGGASHGRDFNMTKLALSGTRHHNGVSRIHGRVSSRILSDMWPQVRPCES PMDFITNGVHVSTFLAKEWQDLFDSMLGYEWRRRQTDVKFWEKVASIPDHHFWAVHQALKSQMLYSVHHHVTQQHLRNHG SDAHLVRMLKFANPLDPNVLTIGFARRFATYKRAALIFENMDWLRSVVKDADRPVLFIFAGKAHPADKPGQELIRRIFDI SRWPEFEGKILMVEGYDMGFARRLVAGCDVWLNTPIYPLEASGTSGMKAAMNGVINLSVADGWWEEGYDGSNGWAIKPAP EYFDETRRDQEDSRDLYELLQDQVIPTYYRRHELGFSDEWVSMAKRSIITLLPRFSSARMVMEYVNKFYGRASRQWRHYS ENGFAAAQHLASWKARVRQAWSGVNLRRLDDPRNRICFGESTALKVAVDLNGLMHEDVRVEVLIGRASKQGEDSNVQAAL MKPDGCAGKECLFSLEFTPGICGKLLYRIRVYPYHESLTHPFEMGLMMWL
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Escherichia coli, GI2367228, Length=418, Percent_Identity=23.444976076555, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011834 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 97696; Mature: 97696
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS00102 PHOSPHORYLASE ; PS00867 CPSASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPGTPFVIEVNPRIPRRLSRMTELANNLWYSWDRPTRTLFALLHPGLWDKVNHNPKAFL CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCCHHHHH KRVDEERLTEAAEDHIFLGSYNRVLSAFDTYMSEPLRRDMPLDLNPGDLIAYFCAEFGFH HHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHCCC ESFPVYSGGLGILAGDHCKSASDLRLPFVAVGLLYRQGYFLQRIDNDGNQIVTYTDSEFE CCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHEEEECCCCCEEEEEECCCCC DLPIKPALIEEETEIHVYVELPGRNVEVKVWVARIGHVRLYLLDTYLPANMEEDRYITHQ CCCCCCCEECCCCEEEEEEEECCCCEEEEEEEEECCCEEEEEEEECCCCCCCCCCEEEEE LYGGDKHTRIKQEIVLGIGGVRALEALGLNPTVYHINEGHAAFMMLERIRRKVKKGLSFH ECCCCCHHHHHHHHHHCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHH AALEATAANTVFTTHTPVPAGHDLFEQEMIWSYFRDCFNDLGVQRDEFMKLGGASHGRDF HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC NMTKLALSGTRHHNGVSRIHGRVSSRILSDMWPQVRPCESPMDFITNGVHVSTFLAKEWQ CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHH DLFDSMLGYEWRRRQTDVKFWEKVASIPDHHFWAVHQALKSQMLYSVHHHVTQQHLRNHG HHHHHHHCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SDAHLVRMLKFANPLDPNVLTIGFARRFATYKRAALIFENMDWLRSVVKDADRPVLFIFA CHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEE GKAHPADKPGQELIRRIFDISRWPEFEGKILMVEGYDMGFARRLVAGCDVWLNTPIYPLE CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCHHEECCCCEEEE ASGTSGMKAAMNGVINLSVADGWWEEGYDGSNGWAIKPAPEYFDETRRDQEDSRDLYELL CCCCCCHHHHHCCEEEEEEECCCHHCCCCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHH QDQVIPTYYRRHELGFSDEWVSMAKRSIITLLPRFSSARMVMEYVNKFYGRASRQWRHYS HHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCC ENGFAAAQHLASWKARVRQAWSGVNLRRLDDPRNRICFGESTALKVAVDLNGLMHEDVRV CCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCEE EVLIGRASKQGEDSNVQAALMKPDGCAGKECLFSLEFTPGICGKLLYRIRVYPYHESLTH EEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHEEEECHHHCCC PFEMGLMMWL HHHHHHHHCC >Mature Secondary Structure MQPGTPFVIEVNPRIPRRLSRMTELANNLWYSWDRPTRTLFALLHPGLWDKVNHNPKAFL CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCCHHHHH KRVDEERLTEAAEDHIFLGSYNRVLSAFDTYMSEPLRRDMPLDLNPGDLIAYFCAEFGFH HHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHCCC ESFPVYSGGLGILAGDHCKSASDLRLPFVAVGLLYRQGYFLQRIDNDGNQIVTYTDSEFE CCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHEEEECCCCCEEEEEECCCCC DLPIKPALIEEETEIHVYVELPGRNVEVKVWVARIGHVRLYLLDTYLPANMEEDRYITHQ CCCCCCCEECCCCEEEEEEEECCCCEEEEEEEEECCCEEEEEEEECCCCCCCCCCEEEEE LYGGDKHTRIKQEIVLGIGGVRALEALGLNPTVYHINEGHAAFMMLERIRRKVKKGLSFH ECCCCCHHHHHHHHHHCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHH AALEATAANTVFTTHTPVPAGHDLFEQEMIWSYFRDCFNDLGVQRDEFMKLGGASHGRDF HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC NMTKLALSGTRHHNGVSRIHGRVSSRILSDMWPQVRPCESPMDFITNGVHVSTFLAKEWQ CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHH DLFDSMLGYEWRRRQTDVKFWEKVASIPDHHFWAVHQALKSQMLYSVHHHVTQQHLRNHG HHHHHHHCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SDAHLVRMLKFANPLDPNVLTIGFARRFATYKRAALIFENMDWLRSVVKDADRPVLFIFA CHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEE GKAHPADKPGQELIRRIFDISRWPEFEGKILMVEGYDMGFARRLVAGCDVWLNTPIYPLE CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCHHEECCCCEEEE ASGTSGMKAAMNGVINLSVADGWWEEGYDGSNGWAIKPAPEYFDETRRDQEDSRDLYELL CCCCCCHHHHHCCEEEEEEECCCHHCCCCCCCCEEECCCHHHHHHHHCCCHHHHHHHHHH QDQVIPTYYRRHELGFSDEWVSMAKRSIITLLPRFSSARMVMEYVNKFYGRASRQWRHYS HHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCC ENGFAAAQHLASWKARVRQAWSGVNLRRLDDPRNRICFGESTALKVAVDLNGLMHEDVRV CCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCEEEEEEECCCCCCCCCEE EVLIGRASKQGEDSNVQAALMKPDGCAGKECLFSLEFTPGICGKLLYRIRVYPYHESLTH EEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHEEEECHHHCCC PFEMGLMMWL HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]