| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is frzE [H]
Identifier: 85858537
GI number: 85858537
Start: 693205
End: 695565
Strand: Direct
Name: frzE [H]
Synonym: SYN_00431
Alternate gene names: 85858537
Gene position: 693205-695565 (Clockwise)
Preceding gene: 85858536
Following gene: 85858538
Centisome position: 21.8
GC content: 52.56
Gene sequence:
>2361_bases ATGGTCAGCAAACAGGAAGCCTTTTTGAAAAAATTGATGGCCACCTTTCGTGTTGAAGCCGCCGATCATTTGAAAACGAT TCTTGCCGGACTGGCGGATCTGGAATGGCGACAGGATGCGGAGAGACACCCGGAAATTATGGAGTCTGTTTTCCGGGAGG TTCATAGTCTGAAAGGAGCCGCCCGGGCAGTCAACCGTGAAGATATTGAGATGCTCTGCCAGGCTTTGGAAAGTGCCTTT GCCGCCCTGAAAAATGGAGCGTTGCATCCTGTCCCGGCTTTATACGATGTCCTTTACGAGGCCATGGACATGCTGGAACT TCTGCTTGCCCCGGACTCACCGGATTTCCGGCCCCTGGAACAGACGCGCATTTCCGGGATGATTTCGAAACTGGAAAAAG CCATTTCCGGTCAGTTTGAAGGGGAGGAAAAGGGTGCGTTAATAAAAGTTGAAGGATCTCGGGAAGCGAAGATTCCGGAG GCGAAACAGGACATGCCGGGCGTGGAAAGTATGGAACCGGTGCAGATCGTATCAGTAACGGCAGCTTCTCCCGAGGAGGG AACGCAGACGGTCGATACGGTCAGAATTTCGACAGAGAAGCTCAACCGCCTGTTTCGGCAGACAGAGGAACTGTTCGTTT CCAAAGGGAATATCCGGGAAAGGCATAACGAACTGCGGGAACTGGGATTGAATCTTGTCGATATGAAGCTGGCATGGACC AGAACGCAGGCGGAGATCAGGAAAATTCAACAGCTTCTCCAAAAGGAAGGGGAAAGCGGTACTGAAAGGGCTCAGCAGGC TTTCCTCAAACTCAATGACATTCTTGAAGGGGACGGACTGCGCCTGCAATCGATTGAGCATTCCCTTAAGTCCGTGACGC GCGCCATTCAGCAGAACAATTACGAATTTGGCGGAATGATCGACAATCTTCTTGAGGAGATGAAGCTGACGCTTTTTCTG CCCTTCTCGTCGCTTCTGGATATGTATCCTCATGTCGTTCGACGATTAGCGCGGGACAGCGGCAAGGAAGTCGATTTCCT GATTGAAGGCGGCGGCATTGAAATCGACCGGCGGATTCTGGAGGAAATAAAGGATCCTCTGATGCATCTTCTGAGGAATG CCATTGATCACGGGATCGAAATGCCCGGTGAACGGCTGCAGAAGGGAAAATCGGCTCAGGGTCGAATTCGGCTCCGCATT CAACAGAAAGACAGTGGCAAGGTAGAAATTCTCCTGGAGGACGACGGGGCCGGCATCCGGAGGGCGGATGTTCGGGAAGC GGCCATGAGGAACGGGTTGCTGTCCCGCGAGGAAGCCGAACGATTGAATGAGGAGGAAGAGCTTTTTCTGATATTTCGTT CCGGTCTGACTACCGCTCCCATCATTACGGACCTTTCCGGCCGGGGGCTGGGACTCGCCATTGTATCGGAAAAGATTGAA AAACTCGGAGGTTCCATCTCCGTGGAAACCGAACCGGACAGGGGGATGACCCTGCGGATTGCATTGCCGCTGATTCTGGC GACATTCCGGGGGATACTGGTTGAAGTCGGCAACCGGCATTTTGTCGTGCCTACGGGAAATGTGGAACGGGTTGCGCGAG TCCGCCCTTCGGACATCAGAACTGTTGAAAACAGGGAAACCGTTCGTTTATATGAAGAAACCCTGTCTCTCGTTCCCCTG GGTTCGATTCTGGGAATTTCGCAGGGAGCACAAACGGAGGTACAGAAAAGTCATGTGGAAATTGCGATTCTCAGTGCGGC AGGAACGCGCCTTGCTTTCAGTCTCGACCGAATCCTGGGTGAACAGGAATTTGTCCTAAAAATCCTGGGAGGGCAGCTTG TCCGGGTAAGAAATATTGCCGGGGCGACCGTGATGGGGACAGGGGAGGTCGTTCCGGTGCTGAATGTTACTGATCTGATC AAGTCCGCCGTCCGATATTCGGAAACGGCAATGCCCAAAGGAATGGCGCCTGGAAAAGAGGTTCCCGCCGAGTCCGAACG ATTGTCGATTCTTGTTGTTGAAGATTCCATTACCTCCCGGACTCTGATAAGAAATATTCTTGAATTTGCCGGTTATCGGG TAAAAACGGCAGTCGACGGAATTGATGCCATGACGGTTTTGCGGACGGATAAATTCGACCTTGTTGTGTCTGATGTGGAA ATGCCGAGAATGAACGGATTCGATCTGACAGCCCGGATCCGCGCGGATAAGAAGCTGGCGGACCTTCCTGTGGTTCTGGT GACCGCTCTGGAGTCACGGGAAGACCGGGAACGGGGAATCGATGTAGGTGCCAACGCCTACATTGTCAAGAGCAGTTTCG ATCAGAGCAATCTGCTTGATGTCATTAAAAGGGTTGCCTGA
Upstream 100 bases:
>100_bases AAGCAGGTGGAGACCGCGGCTCAGAACCTCCATGATCTGGGACAGCAGCTCAAGCAGCTTATTGATCGATACAGGCTCTA AAAAACCGGGTGATGGTTTA
Downstream 100 bases:
>100_bases ATCAGGGGATTACAATGTCTTCAAACGACGCAGATAAGATGATCAAAGTCTTAATTGTAGAGGATTCTCCCGTAGTTCGG GAACTGCTCAGTCACATCCT
Product: chemotaxis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 786; Mature: 786
Protein sequence:
>786_residues MVSKQEAFLKKLMATFRVEAADHLKTILAGLADLEWRQDAERHPEIMESVFREVHSLKGAARAVNREDIEMLCQALESAF AALKNGALHPVPALYDVLYEAMDMLELLLAPDSPDFRPLEQTRISGMISKLEKAISGQFEGEEKGALIKVEGSREAKIPE AKQDMPGVESMEPVQIVSVTAASPEEGTQTVDTVRISTEKLNRLFRQTEELFVSKGNIRERHNELRELGLNLVDMKLAWT RTQAEIRKIQQLLQKEGESGTERAQQAFLKLNDILEGDGLRLQSIEHSLKSVTRAIQQNNYEFGGMIDNLLEEMKLTLFL PFSSLLDMYPHVVRRLARDSGKEVDFLIEGGGIEIDRRILEEIKDPLMHLLRNAIDHGIEMPGERLQKGKSAQGRIRLRI QQKDSGKVEILLEDDGAGIRRADVREAAMRNGLLSREEAERLNEEEELFLIFRSGLTTAPIITDLSGRGLGLAIVSEKIE KLGGSISVETEPDRGMTLRIALPLILATFRGILVEVGNRHFVVPTGNVERVARVRPSDIRTVENRETVRLYEETLSLVPL GSILGISQGAQTEVQKSHVEIAILSAAGTRLAFSLDRILGEQEFVLKILGGQLVRVRNIAGATVMGTGEVVPVLNVTDLI KSAVRYSETAMPKGMAPGKEVPAESERLSILVVEDSITSRTLIRNILEFAGYRVKTAVDGIDAMTVLRTDKFDLVVSDVE MPRMNGFDLTARIRADKKLADLPVVLVTALESREDRERGIDVGANAYIVKSSFDQSNLLDVIKRVA
Sequences:
>Translated_786_residues MVSKQEAFLKKLMATFRVEAADHLKTILAGLADLEWRQDAERHPEIMESVFREVHSLKGAARAVNREDIEMLCQALESAF AALKNGALHPVPALYDVLYEAMDMLELLLAPDSPDFRPLEQTRISGMISKLEKAISGQFEGEEKGALIKVEGSREAKIPE AKQDMPGVESMEPVQIVSVTAASPEEGTQTVDTVRISTEKLNRLFRQTEELFVSKGNIRERHNELRELGLNLVDMKLAWT RTQAEIRKIQQLLQKEGESGTERAQQAFLKLNDILEGDGLRLQSIEHSLKSVTRAIQQNNYEFGGMIDNLLEEMKLTLFL PFSSLLDMYPHVVRRLARDSGKEVDFLIEGGGIEIDRRILEEIKDPLMHLLRNAIDHGIEMPGERLQKGKSAQGRIRLRI QQKDSGKVEILLEDDGAGIRRADVREAAMRNGLLSREEAERLNEEEELFLIFRSGLTTAPIITDLSGRGLGLAIVSEKIE KLGGSISVETEPDRGMTLRIALPLILATFRGILVEVGNRHFVVPTGNVERVARVRPSDIRTVENRETVRLYEETLSLVPL GSILGISQGAQTEVQKSHVEIAILSAAGTRLAFSLDRILGEQEFVLKILGGQLVRVRNIAGATVMGTGEVVPVLNVTDLI KSAVRYSETAMPKGMAPGKEVPAESERLSILVVEDSITSRTLIRNILEFAGYRVKTAVDGIDAMTVLRTDKFDLVVSDVE MPRMNGFDLTARIRADKKLADLPVVLVTALESREDRERGIDVGANAYIVKSSFDQSNLLDVIKRVA >Mature_786_residues MVSKQEAFLKKLMATFRVEAADHLKTILAGLADLEWRQDAERHPEIMESVFREVHSLKGAARAVNREDIEMLCQALESAF AALKNGALHPVPALYDVLYEAMDMLELLLAPDSPDFRPLEQTRISGMISKLEKAISGQFEGEEKGALIKVEGSREAKIPE AKQDMPGVESMEPVQIVSVTAASPEEGTQTVDTVRISTEKLNRLFRQTEELFVSKGNIRERHNELRELGLNLVDMKLAWT RTQAEIRKIQQLLQKEGESGTERAQQAFLKLNDILEGDGLRLQSIEHSLKSVTRAIQQNNYEFGGMIDNLLEEMKLTLFL PFSSLLDMYPHVVRRLARDSGKEVDFLIEGGGIEIDRRILEEIKDPLMHLLRNAIDHGIEMPGERLQKGKSAQGRIRLRI QQKDSGKVEILLEDDGAGIRRADVREAAMRNGLLSREEAERLNEEEELFLIFRSGLTTAPIITDLSGRGLGLAIVSEKIE KLGGSISVETEPDRGMTLRIALPLILATFRGILVEVGNRHFVVPTGNVERVARVRPSDIRTVENRETVRLYEETLSLVPL GSILGISQGAQTEVQKSHVEIAILSAAGTRLAFSLDRILGEQEFVLKILGGQLVRVRNIAGATVMGTGEVVPVLNVTDLI KSAVRYSETAMPKGMAPGKEVPAESERLSILVVEDSITSRTLIRNILEFAGYRVKTAVDGIDAMTVLRTDKFDLVVSDVE MPRMNGFDLTARIRADKKLADLPVVLVTALESREDRERGIDVGANAYIVKSSFDQSNLLDVIKRVA
Specific function: FrzE is involved in a sensory transduction pathway that controls the frequency at which cells reverse their gliding direction. FrzE seems to be capable of autophosphorylating itself on an histidine residue and then to transfer that group to an aspartate r
COG id: COG0643
COG function: function code NT; Chemotaxis protein histidine kinase and related kinases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788197, Length=335, Percent_Identity=34.6268656716418, Blast_Score=194, Evalue=2e-50, Organism=Escherichia coli, GI145693157, Length=122, Percent_Identity=39.344262295082, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1788191, Length=106, Percent_Identity=39.622641509434, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1788713, Length=105, Percent_Identity=37.1428571428571, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI87082012, Length=112, Percent_Identity=34.8214285714286, Blast_Score=69, Evalue=2e-12, Organism=Escherichia coli, GI1786784, Length=103, Percent_Identity=32.0388349514563, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR002545 - InterPro: IPR011006 - InterPro: IPR004358 - InterPro: IPR008207 - InterPro: IPR005467 - InterPro: IPR001789 [H]
Pfam domain/function: PF01584 CheW; PF02518 HATPase_c; PF01627 Hpt; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 87362; Mature: 87362
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: PS50851 CHEW ; PS50894 HPT ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSKQEAFLKKLMATFRVEAADHLKTILAGLADLEWRQDAERHPEIMESVFREVHSLKGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHH ARAVNREDIEMLCQALESAFAALKNGALHPVPALYDVLYEAMDMLELLLAPDSPDFRPLE HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH QTRISGMISKLEKAISGQFEGEEKGALIKVEGSREAKIPEAKQDMPGVESMEPVQIVSVT HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCEEEEEEE AASPEEGTQTVDTVRISTEKLNRLFRQTEELFVSKGNIRERHNELRELGLNLVDMKLAWT CCCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEHHH RTQAEIRKIQQLLQKEGESGTERAQQAFLKLNDILEGDGLRLQSIEHSLKSVTRAIQQNN HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC YEFGGMIDNLLEEMKLTLFLPFSSLLDMYPHVVRRLARDSGKEVDFLIEGGGIEIDRRIL CCCHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH EEIKDPLMHLLRNAIDHGIEMPGERLQKGKSAQGRIRLRIQQKDSGKVEILLEDDGAGIR HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCC RADVREAAMRNGLLSREEAERLNEEEELFLIFRSGLTTAPIITDLSGRGLGLAIVSEKIE HHHHHHHHHHCCCCCHHHHHHCCCCHHEEEEEECCCCCCCCEECCCCCCCCHHHHHHHHH KLGGSISVETEPDRGMTLRIALPLILATFRGILVEVGNRHFVVPTGNVERVARVRPSDIR HCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCHHC TVENRETVRLYEETLSLVPLGSILGISQGAQTEVQKSHVEIAILSAAGTRLAFSLDRILG CCCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHEEEEEEECCCCHHHHHHHHHHC EQEFVLKILGGQLVRVRNIAGATVMGTGEVVPVLNVTDLIKSAVRYSETAMPKGMAPGKE CHHHHHHHHCCCCEEEECCCCCEEECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC VPAESERLSILVVEDSITSRTLIRNILEFAGYRVKTAVDGIDAMTVLRTDKFDLVVSDVE CCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEHHHCCCHHHHEEECCCCEEEEECCC MPRMNGFDLTARIRADKKLADLPVVLVTALESREDRERGIDVGANAYIVKSSFDQSNLLD CCCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH VIKRVA HHHHCC >Mature Secondary Structure MVSKQEAFLKKLMATFRVEAADHLKTILAGLADLEWRQDAERHPEIMESVFREVHSLKGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHH ARAVNREDIEMLCQALESAFAALKNGALHPVPALYDVLYEAMDMLELLLAPDSPDFRPLE HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH QTRISGMISKLEKAISGQFEGEEKGALIKVEGSREAKIPEAKQDMPGVESMEPVQIVSVT HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCEEEEEEE AASPEEGTQTVDTVRISTEKLNRLFRQTEELFVSKGNIRERHNELRELGLNLVDMKLAWT CCCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEHHH RTQAEIRKIQQLLQKEGESGTERAQQAFLKLNDILEGDGLRLQSIEHSLKSVTRAIQQNN HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC YEFGGMIDNLLEEMKLTLFLPFSSLLDMYPHVVRRLARDSGKEVDFLIEGGGIEIDRRIL CCCHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH EEIKDPLMHLLRNAIDHGIEMPGERLQKGKSAQGRIRLRIQQKDSGKVEILLEDDGAGIR HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCC RADVREAAMRNGLLSREEAERLNEEEELFLIFRSGLTTAPIITDLSGRGLGLAIVSEKIE HHHHHHHHHHCCCCCHHHHHHCCCCHHEEEEEECCCCCCCCEECCCCCCCCHHHHHHHHH KLGGSISVETEPDRGMTLRIALPLILATFRGILVEVGNRHFVVPTGNVERVARVRPSDIR HCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCHHC TVENRETVRLYEETLSLVPLGSILGISQGAQTEVQKSHVEIAILSAAGTRLAFSLDRILG CCCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHEEEEEEECCCCHHHHHHHHHHC EQEFVLKILGGQLVRVRNIAGATVMGTGEVVPVLNVTDLIKSAVRYSETAMPKGMAPGKE CHHHHHHHHCCCCEEEECCCCCEEECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC VPAESERLSILVVEDSITSRTLIRNILEFAGYRVKTAVDGIDAMTVLRTDKFDLVVSDVE CCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEHHHCCCHHHHEEECCCCEEEEECCC MPRMNGFDLTARIRADKKLADLPVVLVTALESREDRERGIDVGANAYIVKSSFDQSNLLD CCCCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH VIKRVA HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2165608; 2123853 [H]