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The map label for this gene is atpD

Identifier: 85858477

GI number: 85858477

Start: 633211

End: 634620

Strand: Direct

Name: atpD

Synonym: SYN_00544

Alternate gene names: 85858477

Gene position: 633211-634620 (Clockwise)

Preceding gene: 85858476

Following gene: 85858478

Centisome position: 19.92

GC content: 49.22

Gene sequence:

>1410_bases
ATGAATATAGGAAGGATTGTACAGGTGATCGGGCCGGTCATTGACGTTGTATTCGAAGAGGGCCAGCTTCCGGCAATCTT
GAACGCCATTACCATTACTAATCCCGTCATCAATGATGAAGAGGACAATCTGATTGTTGAGGTGGCGCAGCACTTGGGAG
ACAACAATGTTCGCTGCATTGCAATGGATGTTACTGATGGTTTGGTCAGAGGGATGCCGGCAAAAGATACGGGTGCGCCA
ATCACAGTTCCAGTCGGTAAAGAATGTCTCGGCAGAATTCTGAATGTCGTTGGGAAGCCAGTTGATGGACTGGGTCCCAT
TGAGGCAAAAAATACCATGCCGATTCATAGAGAAGCACCATCCTTCCTGGAGCAGGATACATCAGTGCACGTTCTCGAGA
CGGGTGTGAAAGTTATCGATTTGCTGGTACCTTTCCCCCGGGGCGGCAAGATGGGGCTGTTCGGTGGAGCAGGATGCGGC
AAAACGGTTGTCATGATGGAAATGATTCACAATATTGCAATGCATCATGGCGGTATTTCAGTTTTTGCCGGTGTGGGTGA
AAGAACGCGTGAAGGTAACGACCTTTACAGAGAGATGCTGGAATCAGGCGTTATCAAACAAGCCGCTCTGATTTACGGAC
AGATGACCGAACCTCCGGGAGCAAGAGCGAGAGTATCTCTTACCGCATTGGCAGCAGCGGAATATTTCCGTGATGTTGAA
GGGCAGGACGTGCTACTCTTCGTTGATAATATTTTCCGGTTTACACAGGCGGGTTCAGAAGTATCCGCCCTTCTCGGACG
CATGCCGTCAGCGGTGGGTTATCAGCCGACACTGGCGACAGACCTTGGTGAGCTGCAGGAGAGAATTACATCAACAGACA
AAGGCTCCATTACAGCTGTCCAGTGCGTGTACGTTCCCGCAGACGACTTGACAGACCCGGCGCCTGCAACGACATTTGCC
CACCTTGACGGAACAGTCGTTTTGTCAAGACCGATTGCAGAACTGGGAATCTATCCGGCGGTCGATCCATTGGATTCGAC
ATCGCGCATTCTTGATCCAATTGTTCTGGGTGAAGAGCATTATAAAGTGGCCAGAGCAGTTCAGGTAACTCTGCAGAAAT
ACAAAGACCTGCAGGACATCATCGCCATCCTCGGAATGGACGAACTATCTGAAGAAGATAAGTTGACCGTTAACAGGGCA
AGAAAAATTCAGAGATTCCTTTCTCAGCCATTCTTTGTCGCAGCCCAGTTCACAGGTGTCGACGGGAAATTTGTGTCTGT
GCCGGACACAGTCAGAGGATTTAAGGAAATATTGGAAGGAAAATATGACGATTTACCCGAGCAGGCCTTTTATATGGTTG
GGGGGATCGAGGAAGCGGTTGAAAAAGCCAAAAAATATCAGGAGCAATAA

Upstream 100 bases:

>100_bases
AAGGGTTAGAAATAAAAGCTTGCAAGAATATAAATCGGGAATGTTACTTCTGATTTATAGATAAAAGGATCATGATTTCC
GTAGCGAAAAGGAGACTAAG

Downstream 100 bases:

>100_bases
GAGCAGGGGAAATCAATGGCTGAAGAACTGATATTAGAAATTGTCACTCCGGAGAAGATGGCTTTCAGTAGTGTGGTTGA
GGAAGTGACCATTCCTGGGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MNIGRIVQVIGPVIDVVFEEGQLPAILNAITITNPVINDEEDNLIVEVAQHLGDNNVRCIAMDVTDGLVRGMPAKDTGAP
ITVPVGKECLGRILNVVGKPVDGLGPIEAKNTMPIHREAPSFLEQDTSVHVLETGVKVIDLLVPFPRGGKMGLFGGAGCG
KTVVMMEMIHNIAMHHGGISVFAGVGERTREGNDLYREMLESGVIKQAALIYGQMTEPPGARARVSLTALAAAEYFRDVE
GQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATDLGELQERITSTDKGSITAVQCVYVPADDLTDPAPATTFA
HLDGTVVLSRPIAELGIYPAVDPLDSTSRILDPIVLGEEHYKVARAVQVTLQKYKDLQDIIAILGMDELSEEDKLTVNRA
RKIQRFLSQPFFVAAQFTGVDGKFVSVPDTVRGFKEILEGKYDDLPEQAFYMVGGIEEAVEKAKKYQEQ

Sequences:

>Translated_469_residues
MNIGRIVQVIGPVIDVVFEEGQLPAILNAITITNPVINDEEDNLIVEVAQHLGDNNVRCIAMDVTDGLVRGMPAKDTGAP
ITVPVGKECLGRILNVVGKPVDGLGPIEAKNTMPIHREAPSFLEQDTSVHVLETGVKVIDLLVPFPRGGKMGLFGGAGCG
KTVVMMEMIHNIAMHHGGISVFAGVGERTREGNDLYREMLESGVIKQAALIYGQMTEPPGARARVSLTALAAAEYFRDVE
GQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATDLGELQERITSTDKGSITAVQCVYVPADDLTDPAPATTFA
HLDGTVVLSRPIAELGIYPAVDPLDSTSRILDPIVLGEEHYKVARAVQVTLQKYKDLQDIIAILGMDELSEEDKLTVNRA
RKIQRFLSQPFFVAAQFTGVDGKFVSVPDTVRGFKEILEGKYDDLPEQAFYMVGGIEEAVEKAKKYQEQ
>Mature_469_residues
MNIGRIVQVIGPVIDVVFEEGQLPAILNAITITNPVINDEEDNLIVEVAQHLGDNNVRCIAMDVTDGLVRGMPAKDTGAP
ITVPVGKECLGRILNVVGKPVDGLGPIEAKNTMPIHREAPSFLEQDTSVHVLETGVKVIDLLVPFPRGGKMGLFGGAGCG
KTVVMMEMIHNIAMHHGGISVFAGVGERTREGNDLYREMLESGVIKQAALIYGQMTEPPGARARVSLTALAAAEYFRDVE
GQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATDLGELQERITSTDKGSITAVQCVYVPADDLTDPAPATTFA
HLDGTVVLSRPIAELGIYPAVDPLDSTSRILDPIVLGEEHYKVARAVQVTLQKYKDLQDIIAILGMDELSEEDKLTVNRA
RKIQRFLSQPFFVAAQFTGVDGKFVSVPDTVRGFKEILEGKYDDLPEQAFYMVGGIEEAVEKAKKYQEQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=472, Percent_Identity=70.1271186440678, Blast_Score=665, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=318, Percent_Identity=27.6729559748428, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI50345984, Length=400, Percent_Identity=24.5, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4757810, Length=400, Percent_Identity=24.5, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI19913426, Length=378, Percent_Identity=25.1322751322751, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI19913428, Length=368, Percent_Identity=25, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI1790170, Length=465, Percent_Identity=67.9569892473118, Blast_Score=627, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=303, Percent_Identity=33.993399339934, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1790172, Length=393, Percent_Identity=25.1908396946565, Blast_Score=124, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI25144756, Length=472, Percent_Identity=68.6440677966102, Blast_Score=652, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=336, Percent_Identity=28.2738095238095, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=354, Percent_Identity=25.4237288135593, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=354, Percent_Identity=25.1412429378531, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=386, Percent_Identity=24.8704663212435, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=386, Percent_Identity=24.8704663212435, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=372, Percent_Identity=22.5806451612903, Blast_Score=86, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=70.5627705627706, Blast_Score=666, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=441, Percent_Identity=25.1700680272109, Blast_Score=115, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6319370, Length=383, Percent_Identity=26.8929503916449, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=27.4678111587983, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24638766, Length=472, Percent_Identity=68.4322033898305, Blast_Score=647, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=468, Percent_Identity=67.7350427350427, Blast_Score=619, Evalue=1e-178,
Organism=Drosophila melanogaster, GI20129479, Length=348, Percent_Identity=28.1609195402299, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24583988, Length=355, Percent_Identity=27.0422535211268, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583986, Length=355, Percent_Identity=27.0422535211268, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583984, Length=355, Percent_Identity=27.0422535211268, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583992, Length=329, Percent_Identity=27.6595744680851, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI281361666, Length=353, Percent_Identity=26.0623229461756, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24646341, Length=353, Percent_Identity=26.0623229461756, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI17136796, Length=353, Percent_Identity=26.0623229461756, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24658560, Length=377, Percent_Identity=24.4031830238727, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24638768, Length=96, Percent_Identity=57.2916666666667, Blast_Score=102, Evalue=7e-22,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_SYNAS (Q2LR05)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_460679.1
- HSSP:   P00829
- ProteinModelPortal:   Q2LR05
- SMR:   Q2LR05
- STRING:   Q2LR05
- GeneID:   3884824
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_00544
- NMPDR:   fig|56780.10.peg.626
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- PhylomeDB:   Q2LR05
- ProtClustDB:   PRK09280
- BioCyc:   SACI56780:SYN_00544-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50813; Mature: 50813

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGRIVQVIGPVIDVVFEEGQLPAILNAITITNPVINDEEDNLIVEVAQHLGDNNVRCI
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEE
AMDVTDGLVRGMPAKDTGAPITVPVGKECLGRILNVVGKPVDGLGPIEAKNTMPIHREAP
EEECCHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
SFLEQDTSVHVLETGVKVIDLLVPFPRGGKMGLFGGAGCGKTVVMMEMIHNIAMHHGGIS
HHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
VFAGVGERTREGNDLYREMLESGVIKQAALIYGQMTEPPGARARVSLTALAAAEYFRDVE
EEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCCC
GQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATDLGELQERITSTDKGSITAV
CCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
QCVYVPADDLTDPAPATTFAHLDGTVVLSRPIAELGIYPAVDPLDSTSRILDPIVLGEEH
EEEEECCCCCCCCCCCCEEEECCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCHH
YKVARAVQVTLQKYKDLQDIIAILGMDELSEEDKLTVNRARKIQRFLSQPFFVAAQFTGV
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECC
DGKFVSVPDTVRGFKEILEGKYDDLPEQAFYMVGGIEEAVEKAKKYQEQ
CCEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIGRIVQVIGPVIDVVFEEGQLPAILNAITITNPVINDEEDNLIVEVAQHLGDNNVRCI
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEE
AMDVTDGLVRGMPAKDTGAPITVPVGKECLGRILNVVGKPVDGLGPIEAKNTMPIHREAP
EEECCHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
SFLEQDTSVHVLETGVKVIDLLVPFPRGGKMGLFGGAGCGKTVVMMEMIHNIAMHHGGIS
HHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
VFAGVGERTREGNDLYREMLESGVIKQAALIYGQMTEPPGARARVSLTALAAAEYFRDVE
EEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCCC
GQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATDLGELQERITSTDKGSITAV
CCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
QCVYVPADDLTDPAPATTFAHLDGTVVLSRPIAELGIYPAVDPLDSTSRILDPIVLGEEH
EEEEECCCCCCCCCCCCEEEECCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCHH
YKVARAVQVTLQKYKDLQDIIAILGMDELSEEDKLTVNRARKIQRFLSQPFFVAAQFTGV
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECC
DGKFVSVPDTVRGFKEILEGKYDDLPEQAFYMVGGIEEAVEKAKKYQEQ
CCEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA