Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

Click here to switch to the map view.

The map label for this gene is hemX [H]

Identifier: 85858416

GI number: 85858416

Start: 566240

End: 567055

Strand: Direct

Name: hemX [H]

Synonym: SYN_03385

Alternate gene names: 85858416

Gene position: 566240-567055 (Clockwise)

Preceding gene: 85858415

Following gene: 85858417

Centisome position: 17.81

GC content: 56.13

Gene sequence:

>816_bases
ATGAACACATTTTTCTTCAAGGCGGCGTTTTGCGCTTATCTGGTCAGCGCGCTTGGTTACGTGGCTTCCCTGCTGGTGAA
CCGGTTCCGGATAGCAAAGATGGCCCTCTGGCTGATGATTTCGGCCTTTCTGTTTCACTCCCTTTTCCTTCTGTATCGAC
TTTTTGAAACGGGGCAGACGCCTCTTCTGGGTTTCCACGAAGCTCTGACCTTTTTCGCCTGGGTTATGGCCGGGATTTTT
CTGGCTCTGCAGTTCAAAACCCGGACGGTGGTTCTGGGGGCCTTCGTATCGCCTGTCGTTTGCCTGCTGATGATTTATGC
GAGTCTGGGGCTGCGGAGTGCCGTCACGATCCCCGCGGTCCTGCAGGGTGGCCTGGTGCCGCTCCACGTGATTCTTTCCG
TGACGGGCGAGGCCCTTTTTGCCCTGGCGTCCTGTGCGGGGGCCATGTATCTGCTGCAGGACCGTTTCCTCAAGAGCAAG
AAAGCGGGGCGCATCAGCCGGCTGCTTCCTTCACTGGGAGATCTGGACCGGATCAATCATCTCTGTCTGCTATGGGGATT
TCCCCTGCTGACCATGGGGGTGCTGACAGGTTCCCTCTGGGCCCGACTGGCCCTGGGGAACTCCTGGCTCTGGGATCCCA
AACAGGTCTGGACCTTTACGGTCTGGGGAACTTATGCTGTTTTGCTCCATCAGCGCCTGGCCATTGGCTGGAAGGGTCAT
AAAACCGCCGTTTTTTCACTTCTGGCTTTTCTCCTCTTTCTTGCGGCCTTTCTTGTGGAAAGGGCTTTTTTTACCACGTT
TCACCGGTTTCTCTGA

Upstream 100 bases:

>100_bases
TTTATTCGGACATTCTGGAACTTCTCCGCAGGGGGGACTTGGAAGGCGTCAGAGTCAGAGTTCGGGAGCTTACCGGGGAA
GACCTGGAAATAAAGGCAAC

Downstream 100 bases:

>100_bases
GATCATGGGCATTCTTCTTATCGGCATGAGCCATAAAACCTCACCCCTGGCCGTTCGGGAGCGGTTTTCCCTTTCCTGCG
AAAACCGGGATCATCCTCTG

Product: heme insertion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MNTFFFKAAFCAYLVSALGYVASLLVNRFRIAKMALWLMISAFLFHSLFLLYRLFETGQTPLLGFHEALTFFAWVMAGIF
LALQFKTRTVVLGAFVSPVVCLLMIYASLGLRSAVTIPAVLQGGLVPLHVILSVTGEALFALASCAGAMYLLQDRFLKSK
KAGRISRLLPSLGDLDRINHLCLLWGFPLLTMGVLTGSLWARLALGNSWLWDPKQVWTFTVWGTYAVLLHQRLAIGWKGH
KTAVFSLLAFLLFLAAFLVERAFFTTFHRFL

Sequences:

>Translated_271_residues
MNTFFFKAAFCAYLVSALGYVASLLVNRFRIAKMALWLMISAFLFHSLFLLYRLFETGQTPLLGFHEALTFFAWVMAGIF
LALQFKTRTVVLGAFVSPVVCLLMIYASLGLRSAVTIPAVLQGGLVPLHVILSVTGEALFALASCAGAMYLLQDRFLKSK
KAGRISRLLPSLGDLDRINHLCLLWGFPLLTMGVLTGSLWARLALGNSWLWDPKQVWTFTVWGTYAVLLHQRLAIGWKGH
KTAVFSLLAFLLFLAAFLVERAFFTTFHRFL
>Mature_271_residues
MNTFFFKAAFCAYLVSALGYVASLLVNRFRIAKMALWLMISAFLFHSLFLLYRLFETGQTPLLGFHEALTFFAWVMAGIF
LALQFKTRTVVLGAFVSPVVCLLMIYASLGLRSAVTIPAVLQGGLVPLHVILSVTGEALFALASCAGAMYLLQDRFLKSK
KAGRISRLLPSLGDLDRINHLCLLWGFPLLTMGVLTGSLWARLALGNSWLWDPKQVWTFTVWGTYAVLLHQRLAIGWKGH
KTAVFSLLAFLLFLAAFLVERAFFTTFHRFL

Specific function: Required for hemL synthesis [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30327; Mature: 30327

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10217486 [H]