| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is hemX [H]
Identifier: 85858416
GI number: 85858416
Start: 566240
End: 567055
Strand: Direct
Name: hemX [H]
Synonym: SYN_03385
Alternate gene names: 85858416
Gene position: 566240-567055 (Clockwise)
Preceding gene: 85858415
Following gene: 85858417
Centisome position: 17.81
GC content: 56.13
Gene sequence:
>816_bases ATGAACACATTTTTCTTCAAGGCGGCGTTTTGCGCTTATCTGGTCAGCGCGCTTGGTTACGTGGCTTCCCTGCTGGTGAA CCGGTTCCGGATAGCAAAGATGGCCCTCTGGCTGATGATTTCGGCCTTTCTGTTTCACTCCCTTTTCCTTCTGTATCGAC TTTTTGAAACGGGGCAGACGCCTCTTCTGGGTTTCCACGAAGCTCTGACCTTTTTCGCCTGGGTTATGGCCGGGATTTTT CTGGCTCTGCAGTTCAAAACCCGGACGGTGGTTCTGGGGGCCTTCGTATCGCCTGTCGTTTGCCTGCTGATGATTTATGC GAGTCTGGGGCTGCGGAGTGCCGTCACGATCCCCGCGGTCCTGCAGGGTGGCCTGGTGCCGCTCCACGTGATTCTTTCCG TGACGGGCGAGGCCCTTTTTGCCCTGGCGTCCTGTGCGGGGGCCATGTATCTGCTGCAGGACCGTTTCCTCAAGAGCAAG AAAGCGGGGCGCATCAGCCGGCTGCTTCCTTCACTGGGAGATCTGGACCGGATCAATCATCTCTGTCTGCTATGGGGATT TCCCCTGCTGACCATGGGGGTGCTGACAGGTTCCCTCTGGGCCCGACTGGCCCTGGGGAACTCCTGGCTCTGGGATCCCA AACAGGTCTGGACCTTTACGGTCTGGGGAACTTATGCTGTTTTGCTCCATCAGCGCCTGGCCATTGGCTGGAAGGGTCAT AAAACCGCCGTTTTTTCACTTCTGGCTTTTCTCCTCTTTCTTGCGGCCTTTCTTGTGGAAAGGGCTTTTTTTACCACGTT TCACCGGTTTCTCTGA
Upstream 100 bases:
>100_bases TTTATTCGGACATTCTGGAACTTCTCCGCAGGGGGGACTTGGAAGGCGTCAGAGTCAGAGTTCGGGAGCTTACCGGGGAA GACCTGGAAATAAAGGCAAC
Downstream 100 bases:
>100_bases GATCATGGGCATTCTTCTTATCGGCATGAGCCATAAAACCTCACCCCTGGCCGTTCGGGAGCGGTTTTCCCTTTCCTGCG AAAACCGGGATCATCCTCTG
Product: heme insertion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MNTFFFKAAFCAYLVSALGYVASLLVNRFRIAKMALWLMISAFLFHSLFLLYRLFETGQTPLLGFHEALTFFAWVMAGIF LALQFKTRTVVLGAFVSPVVCLLMIYASLGLRSAVTIPAVLQGGLVPLHVILSVTGEALFALASCAGAMYLLQDRFLKSK KAGRISRLLPSLGDLDRINHLCLLWGFPLLTMGVLTGSLWARLALGNSWLWDPKQVWTFTVWGTYAVLLHQRLAIGWKGH KTAVFSLLAFLLFLAAFLVERAFFTTFHRFL
Sequences:
>Translated_271_residues MNTFFFKAAFCAYLVSALGYVASLLVNRFRIAKMALWLMISAFLFHSLFLLYRLFETGQTPLLGFHEALTFFAWVMAGIF LALQFKTRTVVLGAFVSPVVCLLMIYASLGLRSAVTIPAVLQGGLVPLHVILSVTGEALFALASCAGAMYLLQDRFLKSK KAGRISRLLPSLGDLDRINHLCLLWGFPLLTMGVLTGSLWARLALGNSWLWDPKQVWTFTVWGTYAVLLHQRLAIGWKGH KTAVFSLLAFLLFLAAFLVERAFFTTFHRFL >Mature_271_residues MNTFFFKAAFCAYLVSALGYVASLLVNRFRIAKMALWLMISAFLFHSLFLLYRLFETGQTPLLGFHEALTFFAWVMAGIF LALQFKTRTVVLGAFVSPVVCLLMIYASLGLRSAVTIPAVLQGGLVPLHVILSVTGEALFALASCAGAMYLLQDRFLKSK KAGRISRLLPSLGDLDRINHLCLLWGFPLLTMGVLTGSLWARLALGNSWLWDPKQVWTFTVWGTYAVLLHQRLAIGWKGH KTAVFSLLAFLLFLAAFLVERAFFTTFHRFL
Specific function: Required for hemL synthesis [H]
COG id: COG0755
COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002541 [H]
Pfam domain/function: PF01578 Cytochrom_C_asm [H]
EC number: NA
Molecular weight: Translated: 30327; Mature: 30327
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTFFFKAAFCAYLVSALGYVASLLVNRFRIAKMALWLMISAFLFHSLFLLYRLFETGQT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PLLGFHEALTFFAWVMAGIFLALQFKTRTVVLGAFVSPVVCLLMIYASLGLRSAVTIPAV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LQGGLVPLHVILSVTGEALFALASCAGAMYLLQDRFLKSKKAGRISRLLPSLGDLDRINH HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHH LCLLWGFPLLTMGVLTGSLWARLALGNSWLWDPKQVWTFTVWGTYAVLLHQRLAIGWKGH HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHCCCCH KTAVFSLLAFLLFLAAFLVERAFFTTFHRFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MNTFFFKAAFCAYLVSALGYVASLLVNRFRIAKMALWLMISAFLFHSLFLLYRLFETGQT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PLLGFHEALTFFAWVMAGIFLALQFKTRTVVLGAFVSPVVCLLMIYASLGLRSAVTIPAV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LQGGLVPLHVILSVTGEALFALASCAGAMYLLQDRFLKSKKAGRISRLLPSLGDLDRINH HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHH LCLLWGFPLLTMGVLTGSLWARLALGNSWLWDPKQVWTFTVWGTYAVLLHQRLAIGWKGH HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEHHHHHHHHHHHHHHHHCCCCH KTAVFSLLAFLLFLAAFLVERAFFTTFHRFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10217486 [H]