| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85858409
Identifier: 85858409
GI number: 85858409
Start: 559761
End: 560915
Strand: Direct
Name: 85858409
Synonym: SYN_02283
Alternate gene names: NA
Gene position: 559761-560915 (Clockwise)
Preceding gene: 85858408
Following gene: 85858410
Centisome position: 17.61
GC content: 55.24
Gene sequence:
>1155_bases ATGGCCAAAACAAATTTTGTGGACGGCAATCCCGCCGAGCAAATCGAAGGGACGATCGTCACCGCGGCGTTCCTCAACGC CCTGAACAACCACCGTCACCGGGGCCTGGCCGAGGACGGCGACGGCGCAATCGACTATGCCGCCGACACCGGATCGGCAG ATGCATACGCGATAGCCCTGTCTCCGGCCCTGGCAGCCCATGTGACTGGAATGCCGATATCGTTTAAGGCGGCCAATGCC AACACGGGAGCGGCAACCCTCAATGTCGACGGGCTGGGCGCGGTTGCCGTTAAGAAAAAGGGCGGCGTGACACTCGTCGC CGGTGACATACCGGTCGATGGAATAGCAGTGGTTGCCTATGATGGCACCTGTTATCAACTGCTCAATCCGGCCTCAAGCT CATTGAAACAGATCCAATCCATCGCCGCATCGGTAGGCTCCAACGCCCTGTCGCTGACCTACAACGGCGGCACTTTGGAT TTCAGGAACGCCACATTGGCCGTCGGCGCTCCCGTGACAGGCGTGGATGTATCCACAATTTCCCTTACTGTTCCTTCCGG GGCCACTTTGGGAACGGTTAACGCGATCCAGGCCATGCTTGCCCTGGTAGTCCTTTACAATGGAGGCAGTCCTGCTCTCG GTGTCGTCAATATGGGTGGCAGTGTAAATCTCGATGAAACCACCTTATTGTCCACTACGGCAATCAGCGACGCCGCTGAT TCCGCTGCTGTTGTTTATTCAACCAACGCGATCACCAACAGTCCTTTTAGAGTAGTTGGCTTCATTAACATCACGGAAGC GACGGCAGGAGCTTGGGCCACGGCTCCTACACTGGTCCAGGGACATGGCGGTCAGGCAATGGCAGCAATGCAGTCGCTTG GATATGGCCAGACCTGGCAGAATGTAACTGCAAGCAGGTCGGTGAATACGACCTATTACAACACGACTTCACGCCCGATT ATGCTGTCCGTCACATCGAGTGGAGGCTCTCCAACTTTGACGATGGAGTTATATATCAACGGAGAGTTGATGCAGCGACC ATCGGTATCTGGCACTGGCGTAACAACTCAAATGTTCGTATCAGCAATTATTCCATCGGGAGCAAGTTATAAAGTTGCGG CCGGGGGGGTGGCATATTGGCTTGAATTAAGATGA
Upstream 100 bases:
>100_bases GCCCATACGGTCGTGATCTTCAACTATGCATAGAGTGACGGAAACGCAAAACCCGGTGCTGCAGTTATTATTGAACACTA TTGAACAATAAGGAGGAATT
Downstream 100 bases:
>100_bases GAGGAGGAGAATACATGCCATATTATAAAGATAAAAATAATAATATTCACTTTCTGGATAATGAAAAATTTGAACAACTA TTGCCGTCAGGGTGCTTAAA
Product: cytoplasmic protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MAKTNFVDGNPAEQIEGTIVTAAFLNALNNHRHRGLAEDGDGAIDYAADTGSADAYAIALSPALAAHVTGMPISFKAANA NTGAATLNVDGLGAVAVKKKGGVTLVAGDIPVDGIAVVAYDGTCYQLLNPASSSLKQIQSIAASVGSNALSLTYNGGTLD FRNATLAVGAPVTGVDVSTISLTVPSGATLGTVNAIQAMLALVVLYNGGSPALGVVNMGGSVNLDETTLLSTTAISDAAD SAAVVYSTNAITNSPFRVVGFINITEATAGAWATAPTLVQGHGGQAMAAMQSLGYGQTWQNVTASRSVNTTYYNTTSRPI MLSVTSSGGSPTLTMELYINGELMQRPSVSGTGVTTQMFVSAIIPSGASYKVAAGGVAYWLELR
Sequences:
>Translated_384_residues MAKTNFVDGNPAEQIEGTIVTAAFLNALNNHRHRGLAEDGDGAIDYAADTGSADAYAIALSPALAAHVTGMPISFKAANA NTGAATLNVDGLGAVAVKKKGGVTLVAGDIPVDGIAVVAYDGTCYQLLNPASSSLKQIQSIAASVGSNALSLTYNGGTLD FRNATLAVGAPVTGVDVSTISLTVPSGATLGTVNAIQAMLALVVLYNGGSPALGVVNMGGSVNLDETTLLSTTAISDAAD SAAVVYSTNAITNSPFRVVGFINITEATAGAWATAPTLVQGHGGQAMAAMQSLGYGQTWQNVTASRSVNTTYYNTTSRPI MLSVTSSGGSPTLTMELYINGELMQRPSVSGTGVTTQMFVSAIIPSGASYKVAAGGVAYWLELR >Mature_383_residues AKTNFVDGNPAEQIEGTIVTAAFLNALNNHRHRGLAEDGDGAIDYAADTGSADAYAIALSPALAAHVTGMPISFKAANAN TGAATLNVDGLGAVAVKKKGGVTLVAGDIPVDGIAVVAYDGTCYQLLNPASSSLKQIQSIAASVGSNALSLTYNGGTLDF RNATLAVGAPVTGVDVSTISLTVPSGATLGTVNAIQAMLALVVLYNGGSPALGVVNMGGSVNLDETTLLSTTAISDAADS AAVVYSTNAITNSPFRVVGFINITEATAGAWATAPTLVQGHGGQAMAAMQSLGYGQTWQNVTASRSVNTTYYNTTSRPIM LSVTSSGGSPTLTMELYINGELMQRPSVSGTGVTTQMFVSAIIPSGASYKVAAGGVAYWLELR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38795; Mature: 38664
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTNFVDGNPAEQIEGTIVTAAFLNALNNHRHRGLAEDGDGAIDYAADTGSADAYAIAL CCCCCCCCCCCHHHHCCEEEHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEE SPALAAHVTGMPISFKAANANTGAATLNVDGLGAVAVKKKGGVTLVAGDIPVDGIAVVAY CCHHHHHCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEEEEE DGTCYQLLNPASSSLKQIQSIAASVGSNALSLTYNGGTLDFRNATLAVGAPVTGVDVSTI CCCCHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCEEEECCCCCCCEEEEE SLTVPSGATLGTVNAIQAMLALVVLYNGGSPALGVVNMGGSVNLDETTLLSTTAISDAAD EEECCCCCCCCHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCC SAAVVYSTNAITNSPFRVVGFINITEATAGAWATAPTLVQGHGGQAMAAMQSLGYGQTWQ CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCC NVTASRSVNTTYYNTTSRPIMLSVTSSGGSPTLTMELYINGELMQRPSVSGTGVTTQMFV CCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEECCCCCCCCCHHHHHH SAIIPSGASYKVAAGGVAYWLELR HHHCCCCCCEEEECCCEEEEEEEC >Mature Secondary Structure AKTNFVDGNPAEQIEGTIVTAAFLNALNNHRHRGLAEDGDGAIDYAADTGSADAYAIAL CCCCCCCCCCHHHHCCEEEHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEE SPALAAHVTGMPISFKAANANTGAATLNVDGLGAVAVKKKGGVTLVAGDIPVDGIAVVAY CCHHHHHCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEEEEE DGTCYQLLNPASSSLKQIQSIAASVGSNALSLTYNGGTLDFRNATLAVGAPVTGVDVSTI CCCCHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCEEEECCCCCCCEEEEE SLTVPSGATLGTVNAIQAMLALVVLYNGGSPALGVVNMGGSVNLDETTLLSTTAISDAAD EEECCCCCCCCHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCC SAAVVYSTNAITNSPFRVVGFINITEATAGAWATAPTLVQGHGGQAMAAMQSLGYGQTWQ CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCC NVTASRSVNTTYYNTTSRPIMLSVTSSGGSPTLTMELYINGELMQRPSVSGTGVTTQMFV CCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEEEECCEEEECCCCCCCCCHHHHHH SAIIPSGASYKVAAGGVAYWLELR HHHCCCCCCEEEECCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA