| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85858402
Identifier: 85858402
GI number: 85858402
Start: 553121
End: 554863
Strand: Direct
Name: 85858402
Synonym: SYN_02290
Alternate gene names: NA
Gene position: 553121-554863 (Clockwise)
Preceding gene: 85858401
Following gene: 85858403
Centisome position: 17.4
GC content: 62.02
Gene sequence:
>1743_bases ATGACGAACATGAAGGTCTTCTTGGAACTGGTCGCAGATTCCCGCAGGATGAAAGACGGGATGAAACAGGGCGAACGCGC CATGTCCGGTTTTACGCACAAGGCGAAGGCGGAAATGGCGTCGCTCCGGAATGCCGTCGGCAGCCTCCAGGGCAGGCTTG CCGGGCTGGGCGTGTCGATTGGAGCGGGCGCCCTGATGTGGCAGTCGGCCAATCTGGACAAGTCTCTCACGCAGATCGGC CAGACGGCGGGCGCAACGGCCCTTCAGGTGCGGCAACTCCGCGGCGATCTGTTCCGGCTGGGAAAAGACTCCGGGCAGGA TGTGGATAACCTCAAGGAAGGTTTCAATGTCCTGGTTCAGTCCGGACTGAACATGAAGGAAGCGAAGGCGACCCTGGAAG GGGTCAACACGGCGATGGCGGTCACCGGCTCCGAGGCCCGGACACTGGCCGGTGGTCTCACCGTGGCGTCAACGGCTTTT CAGTTCGATCTGGCCAAACCGGGGCTGGCCCTGGAACTGCTGGACAAGATGACCGTAGCGGGGCGGCTGGGGAATGCCGA ACTGGAAAACCTGTCCGGTATTTTTGCCCGCGTGGGGGTCAACGCCGCCTCGGCGGGAATGAACTTTGACGCGACCCTGG CCTTTGTCGAGGCGCTCTCCCAGATCGAACGGGAGCCGGAGAAGCTGGCTACGCTGGCAGACAGCACTCTGCGCGTCTTC ACCAATTTGAGATATATGGCGGAGGCCCAGAAGGCCACGGGCGTCCGCTTCTTCGATGCCGAGGGGCAGCGTCGGGACGC GATGGCCGTCCTGGAGGACATCCGGAAGAAATACAAGACGTTGACCACGGATGCCCAGCGGGCCGAATTCGTGCAGAAAG CCTTCGGAAAGGCGGATCTCGACACGATCAAGGGATTCAGAACCCTCTTGAGCGGGAACTCCCTGGACGACGTCCGCCGG TTTTCCCAGGAGATCGGCCAGGCGGGTGGGACACTGAAGCGGGACATGAAGGACGCCACGGCGAATCTCGTCGATCAGGC AGGCCGGTTGAAGGCTTCTCTGCGGGAAGCGGCGGACGGGTTTGCCGCTCCAGTCAACAAGGCCCTGGCGGATCTGATTG CCTGGAGCATGGCAGGCAAAAAGGACGGTGGACTGGGTCTGTCGGGCAAGGAGATGCTCGGCTATGGGGCAGGAATCAGC ATCGCAACCATGCTGGCCGGTCGGTATGGCGGGAAGGCAATCGGGGGATTCCTGAAGAAACGGGCGGGAACGGCGGCGGG CATCGCTGAAGGAAAGGCCGTGCAGGCCGCCACGGGTGTGACGCCTGTCTTCGTGACGAACTGGCCGGGAGGATTCGGGG GAGCAGCCCTGGAGGCGGCAGGTGCGGGCGCGGTTGCCAGAACGGGCCTGGGAACCCTGAAAAAACTGGGAGGAAACGCC CTGAAATTCGCCCCGGCGGCGGGCGTCTGGGGACTGGGAGCGGGAACGTCAGCCCTGGCAGGCTACGGTATCGGCAACCT GCTTAACCGGGGTCTCGGCTGGCTGTCCGGAAAGGCCAGCGGCGGAAAATACAAAGGGGAAGGCTGGCTGGGCGACATGC TTTACAGCCTGGTGCATAAGGAGAAAAAACAGGAAAACAAGATCAATCTCTCTATCCGGGTTGACCAGTACGGCCGGGTG ATCACCAACTCGAACGACATGAATACGACACTGAACGTAAGCATGGCAAGGGGGGCCTTCTAA
Upstream 100 bases:
>100_bases CTCGGCGAGGCGGAGAACCTCCTGGAGGTCTGGCACGAGATGGTCAACCCGGAAGAGAAAAGGTCCGTGAAATACCGGGT GAAGAGGGATTGATACCACC
Downstream 100 bases:
>100_bases TGGCCGCCGAACTGAACGTCGGAGTTCTGGCCGGCATTCCCCTGGAAATGGAGATGCTCGACGATTCCTTCGCCTGTGCC ATCGCCCGGTACGCCTATCC
Product: phage-related tail protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 580; Mature: 579
Protein sequence:
>580_residues MTNMKVFLELVADSRRMKDGMKQGERAMSGFTHKAKAEMASLRNAVGSLQGRLAGLGVSIGAGALMWQSANLDKSLTQIG QTAGATALQVRQLRGDLFRLGKDSGQDVDNLKEGFNVLVQSGLNMKEAKATLEGVNTAMAVTGSEARTLAGGLTVASTAF QFDLAKPGLALELLDKMTVAGRLGNAELENLSGIFARVGVNAASAGMNFDATLAFVEALSQIEREPEKLATLADSTLRVF TNLRYMAEAQKATGVRFFDAEGQRRDAMAVLEDIRKKYKTLTTDAQRAEFVQKAFGKADLDTIKGFRTLLSGNSLDDVRR FSQEIGQAGGTLKRDMKDATANLVDQAGRLKASLREAADGFAAPVNKALADLIAWSMAGKKDGGLGLSGKEMLGYGAGIS IATMLAGRYGGKAIGGFLKKRAGTAAGIAEGKAVQAATGVTPVFVTNWPGGFGGAALEAAGAGAVARTGLGTLKKLGGNA LKFAPAAGVWGLGAGTSALAGYGIGNLLNRGLGWLSGKASGGKYKGEGWLGDMLYSLVHKEKKQENKINLSIRVDQYGRV ITNSNDMNTTLNVSMARGAF
Sequences:
>Translated_580_residues MTNMKVFLELVADSRRMKDGMKQGERAMSGFTHKAKAEMASLRNAVGSLQGRLAGLGVSIGAGALMWQSANLDKSLTQIG QTAGATALQVRQLRGDLFRLGKDSGQDVDNLKEGFNVLVQSGLNMKEAKATLEGVNTAMAVTGSEARTLAGGLTVASTAF QFDLAKPGLALELLDKMTVAGRLGNAELENLSGIFARVGVNAASAGMNFDATLAFVEALSQIEREPEKLATLADSTLRVF TNLRYMAEAQKATGVRFFDAEGQRRDAMAVLEDIRKKYKTLTTDAQRAEFVQKAFGKADLDTIKGFRTLLSGNSLDDVRR FSQEIGQAGGTLKRDMKDATANLVDQAGRLKASLREAADGFAAPVNKALADLIAWSMAGKKDGGLGLSGKEMLGYGAGIS IATMLAGRYGGKAIGGFLKKRAGTAAGIAEGKAVQAATGVTPVFVTNWPGGFGGAALEAAGAGAVARTGLGTLKKLGGNA LKFAPAAGVWGLGAGTSALAGYGIGNLLNRGLGWLSGKASGGKYKGEGWLGDMLYSLVHKEKKQENKINLSIRVDQYGRV ITNSNDMNTTLNVSMARGAF >Mature_579_residues TNMKVFLELVADSRRMKDGMKQGERAMSGFTHKAKAEMASLRNAVGSLQGRLAGLGVSIGAGALMWQSANLDKSLTQIGQ TAGATALQVRQLRGDLFRLGKDSGQDVDNLKEGFNVLVQSGLNMKEAKATLEGVNTAMAVTGSEARTLAGGLTVASTAFQ FDLAKPGLALELLDKMTVAGRLGNAELENLSGIFARVGVNAASAGMNFDATLAFVEALSQIEREPEKLATLADSTLRVFT NLRYMAEAQKATGVRFFDAEGQRRDAMAVLEDIRKKYKTLTTDAQRAEFVQKAFGKADLDTIKGFRTLLSGNSLDDVRRF SQEIGQAGGTLKRDMKDATANLVDQAGRLKASLREAADGFAAPVNKALADLIAWSMAGKKDGGLGLSGKEMLGYGAGISI ATMLAGRYGGKAIGGFLKKRAGTAAGIAEGKAVQAATGVTPVFVTNWPGGFGGAALEAAGAGAVARTGLGTLKKLGGNAL KFAPAAGVWGLGAGTSALAGYGIGNLLNRGLGWLSGKASGGKYKGEGWLGDMLYSLVHKEKKQENKINLSIRVDQYGRVI TNSNDMNTTLNVSMARGAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60657; Mature: 60526
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNMKVFLELVADSRRMKDGMKQGERAMSGFTHKAKAEMASLRNAVGSLQGRLAGLGVSI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEC GAGALMWQSANLDKSLTQIGQTAGATALQVRQLRGDLFRLGKDSGQDVDNLKEGFNVLVQ CCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH SGLNMKEAKATLEGVNTAMAVTGSEARTLAGGLTVASTAFQFDLAKPGLALELLDKMTVA CCCCHHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHEEECCCCCHHHHHHHHHHHH GRLGNAELENLSGIFARVGVNAASAGMNFDATLAFVEALSQIEREPEKLATLADSTLRVF HCCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH TNLRYMAEAQKATGVRFFDAEGQRRDAMAVLEDIRKKYKTLTTDAQRAEFVQKAFGKADL HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH DTIKGFRTLLSGNSLDDVRRFSQEIGQAGGTLKRDMKDATANLVDQAGRLKASLREAADG HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FAAPVNKALADLIAWSMAGKKDGGLGLSGKEMLGYGAGISIATMLAGRYGGKAIGGFLKK HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHH RAGTAAGIAEGKAVQAATGVTPVFVTNWPGGFGGAALEAAGAGAVARTGLGTLKKLGGNA HCCCCCCCCCCCCEEHHCCCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCC LKFAPAAGVWGLGAGTSALAGYGIGNLLNRGLGWLSGKASGGKYKGEGWLGDMLYSLVHK EEECCCCCCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH EKKQENKINLSIRVDQYGRVITNSNDMNTTLNVSMARGAF HHHHCCCEEEEEEECCCCCEEECCCCCCCEEEEEECCCCC >Mature Secondary Structure TNMKVFLELVADSRRMKDGMKQGERAMSGFTHKAKAEMASLRNAVGSLQGRLAGLGVSI CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEC GAGALMWQSANLDKSLTQIGQTAGATALQVRQLRGDLFRLGKDSGQDVDNLKEGFNVLVQ CCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH SGLNMKEAKATLEGVNTAMAVTGSEARTLAGGLTVASTAFQFDLAKPGLALELLDKMTVA CCCCHHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHEEECCCCCHHHHHHHHHHHH GRLGNAELENLSGIFARVGVNAASAGMNFDATLAFVEALSQIEREPEKLATLADSTLRVF HCCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH TNLRYMAEAQKATGVRFFDAEGQRRDAMAVLEDIRKKYKTLTTDAQRAEFVQKAFGKADL HHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH DTIKGFRTLLSGNSLDDVRRFSQEIGQAGGTLKRDMKDATANLVDQAGRLKASLREAADG HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FAAPVNKALADLIAWSMAGKKDGGLGLSGKEMLGYGAGISIATMLAGRYGGKAIGGFLKK HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHH RAGTAAGIAEGKAVQAATGVTPVFVTNWPGGFGGAALEAAGAGAVARTGLGTLKKLGGNA HCCCCCCCCCCCCEEHHCCCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCC LKFAPAAGVWGLGAGTSALAGYGIGNLLNRGLGWLSGKASGGKYKGEGWLGDMLYSLVHK EEECCCCCCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH EKKQENKINLSIRVDQYGRVITNSNDMNTTLNVSMARGAF HHHHCCCEEEEEEECCCCCEEECCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA