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The map label for this gene is rpoZ

Identifier: 85858122

GI number: 85858122

Start: 290329

End: 290604

Strand: Direct

Name: rpoZ

Synonym: SYN_01280

Alternate gene names: 85858122

Gene position: 290329-290604 (Clockwise)

Preceding gene: 85858121

Following gene: 85858123

Centisome position: 9.13

GC content: 48.55

Gene sequence:

>276_bases
ATGGCAAGAATTACTGTTGAAGATGCTTTAAAGGTTGCAGGGAATCGTTTCGCACTGGTTTTGCTGGCCGTGCAGAGGTC
CAAGCAGCTTTTGAGGGGTGCCAGACCGTTGACCAACGTTCGCAACAACAGGGAGATTGTCGCGGCACTTCGGGAAATTG
CGGATAACAAGGTTTATTTCTCTCATCCGGAATATCTGATGGGGGCCAAGGAAGATTTCAAGCTCATCGCGGACGATACG
ACGGAATTTATCGGTGACGAAGACTATGTCGAATAA

Upstream 100 bases:

>100_bases
AAGTCGAGCTTCGAGAATGAGTAAACAGATTCAGGGTGTTCTGGATTCTGAGTAAATATAAACATAAGCAGGAAATATTT
TTCAGGGAGGCCTGTTCAAC

Downstream 100 bases:

>100_bases
GGAGTCATTGGAGAAGCTTATTTTCGCCCTGGATATGGGGGGCGGACTGGATGATGTCATGTCCTGGGTGCGGCGTCTTG
CGGGCCATGTCGGGGTATTC

Product: RNA polymerase subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MARITVEDALKVAGNRFALVLLAVQRSKQLLRGARPLTNVRNNREIVAALREIADNKVYFSHPEYLMGAKEDFKLIADDT
TEFIGDEDYVE

Sequences:

>Translated_91_residues
MARITVEDALKVAGNRFALVLLAVQRSKQLLRGARPLTNVRNNREIVAALREIADNKVYFSHPEYLMGAKEDFKLIADDT
TEFIGDEDYVE
>Mature_90_residues
ARITVEDALKVAGNRFALVLLAVQRSKQLLRGARPLTNVRNNREIVAALREIADNKVYFSHPEYLMGAKEDFKLIADDTT
EFIGDEDYVE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_SYNAS (Q2LQ83)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_460324.1
- STRING:   Q2LQ83
- GeneID:   3884669
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_01280
- NMPDR:   fig|56780.10.peg.278
- HOGENOM:   HBG742204
- OMA:   HRSSHEV
- BioCyc:   SACI56780:SYN_01280-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 10325; Mature: 10194

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVEDALKVAGNRFALVLLAVQRSKQLLRGARPLTNVRNNREIVAALREIADNKVYF
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCEEE
SHPEYLMGAKEDFKLIADDTTEFIGDEDYVE
CCCHHHHCCCCCCEEEECCHHHHCCCCCCCC
>Mature Secondary Structure 
ARITVEDALKVAGNRFALVLLAVQRSKQLLRGARPLTNVRNNREIVAALREIADNKVYF
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCEEE
SHPEYLMGAKEDFKLIADDTTEFIGDEDYVE
CCCHHHHCCCCCCEEEECCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA