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The map label for this gene is ysgA [H]

Identifier: 85858093

GI number: 85858093

Start: 263947

End: 264765

Strand: Direct

Name: ysgA [H]

Synonym: SYN_01444

Alternate gene names: 85858093

Gene position: 263947-264765 (Clockwise)

Preceding gene: 85858092

Following gene: 85858094

Centisome position: 8.3

GC content: 59.1

Gene sequence:

>819_bases
ATGGCCATTCCGCGGCATTTGACGATGCAGAATCCCTCCAAAGCGCAACTTCGGCTCTGGAGCCGTCTGGATAAGGTGAA
AACCCGTGAAGAAACAGGACTTTTTCTCGCGGAGGGCTTCAAGGTCGTCCAGGCTCTTCTGGAAAGCCGCTGGGACGTTC
AGGCACTGCTGATTCTGGAGGAAAAAAAAGATCGGTGGGCGGCCTTCTGTGAGACCCTGCCGGTTTCCCTCCCCCTTTAC
GGATTGACTCGGAAGGAGTGGAAAGGGCTGACCCAGGATGTTTCGCCGGAAGGGATTCTGGCCGTGGGCATCACCCCTCC
CAGGCTGCAGCTTGCCGACCTGATGGCAAAGGGGGCCCGTGGGCCGCTGCTGCTGCTCCATGAAATCAACAATCCGGGAA
ATCTGGGGACTCTCGTGCGCACAGCCTTGTGGTTTGGCTTTGCGGGTGTGGTTCTGAGTCAGGGATCCGTGGATCCCTTG
AATCCCAAAGTGATTCGGGCGGCCATGGGGAGCATCTTTCACGTGCCCTTTCTGTTCGGGGCGGATCTGTCGAAAGTGCT
GCCTCGAGTCAAAGAGAACTTCCATGTGGTGGGAAGTTCGGTTCGAACGGGAACACTTCCCCATGCCTGCGGAGAGAAAA
CGGCCCTGCTCCTGGGGAGCGAAAGCCATGGCCTGCCGGAGACTCTGCTGAAATTGACCGATGAGCAGTGGCACATTCCC
CGGCGGGGCGTCGGCGAATCGCTCAGCCTTCCTCAGGCTGCGGCTATTCTTATGTACGAATGCGTCCGGAGCGCGCCTTC
CCGGGCGGCAAGGCCATGA

Upstream 100 bases:

>100_bases
GGGTGGTGCGCAATCCCGACCAGCACAAGCGGATAGAAGAAGAAGTCAAAAAACTGGCTGGGGACAGGTATGTCGAATTC
CATATCCATTATCGCGGTTC

Downstream 100 bases:

>100_bases
CCCCGATTTCAAAAGAAAAAAATCAGAAAGAACAGGAAGCTATGGGAATCTATGTTCAGGTATCGACAACGGTGGATGCC
GAAGCGGATGCCGCAAAAAT

Product: 23S rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MAIPRHLTMQNPSKAQLRLWSRLDKVKTREETGLFLAEGFKVVQALLESRWDVQALLILEEKKDRWAAFCETLPVSLPLY
GLTRKEWKGLTQDVSPEGILAVGITPPRLQLADLMAKGARGPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPL
NPKVIRAAMGSIFHVPFLFGADLSKVLPRVKENFHVVGSSVRTGTLPHACGEKTALLLGSESHGLPETLLKLTDEQWHIP
RRGVGESLSLPQAAAILMYECVRSAPSRAARP

Sequences:

>Translated_272_residues
MAIPRHLTMQNPSKAQLRLWSRLDKVKTREETGLFLAEGFKVVQALLESRWDVQALLILEEKKDRWAAFCETLPVSLPLY
GLTRKEWKGLTQDVSPEGILAVGITPPRLQLADLMAKGARGPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPL
NPKVIRAAMGSIFHVPFLFGADLSKVLPRVKENFHVVGSSVRTGTLPHACGEKTALLLGSESHGLPETLLKLTDEQWHIP
RRGVGESLSLPQAAAILMYECVRSAPSRAARP
>Mature_271_residues
AIPRHLTMQNPSKAQLRLWSRLDKVKTREETGLFLAEGFKVVQALLESRWDVQALLILEEKKDRWAAFCETLPVSLPLYG
LTRKEWKGLTQDVSPEGILAVGITPPRLQLADLMAKGARGPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLN
PKVIRAAMGSIFHVPFLFGADLSKVLPRVKENFHVVGSSVRTGTLPHACGEKTALLLGSESHGLPETLLKLTDEQWHIPR
RGVGESLSLPQAAAILMYECVRSAPSRAARP

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=238, Percent_Identity=27.3109243697479, Blast_Score=63, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24666840, Length=289, Percent_Identity=23.8754325259516, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29840; Mature: 29709

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPRHLTMQNPSKAQLRLWSRLDKVKTREETGLFLAEGFKVVQALLESRWDVQALLILE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEE
EKKDRWAAFCETLPVSLPLYGLTRKEWKGLTQDVSPEGILAVGITPPRLQLADLMAKGAR
CCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCC
GPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFHVPFLFG
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
ADLSKVLPRVKENFHVVGSSVRTGTLPHACGEKTALLLGSESHGLPETLLKLTDEQWHIP
CCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCC
RRGVGESLSLPQAAAILMYECVRSAPSRAARP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AIPRHLTMQNPSKAQLRLWSRLDKVKTREETGLFLAEGFKVVQALLESRWDVQALLILE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEE
EKKDRWAAFCETLPVSLPLYGLTRKEWKGLTQDVSPEGILAVGITPPRLQLADLMAKGAR
CCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCC
GPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFHVPFLFG
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
ADLSKVLPRVKENFHVVGSSVRTGTLPHACGEKTALLLGSESHGLPETLLKLTDEQWHIP
CCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCC
RRGVGESLSLPQAAAILMYECVRSAPSRAARP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]